View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_33 (Length: 218)
Name: NF5243_low_33
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 46185337 - 46185483
Alignment:
| Q |
51 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaa |
150 |
Q |
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| T |
46185337 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctccagagaagacgaagcatcatgaa |
46185436 |
T |
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| Q |
151 |
gtaacaattcgtttcaatgtgactgttggacctgacctgagtataca |
197 |
Q |
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| T |
46185437 |
gtaacaattcgtttcaatgtgactgttgcacctgacctgagtataca |
46185483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 46185251 - 46185306
Alignment:
| Q |
16 |
aatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
71 |
Q |
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| T |
46185251 |
aatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
46185306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 5895340 - 5895242
Alignment:
| Q |
66 |
tttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattcgttt |
164 |
Q |
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| T |
5895340 |
tttgatagtgaacaaattcagatgagaagagaatgattgagatgacaaagtggaagctccaccaaagaagacgaagcaccgggaagtaacaatttgttt |
5895242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 5895400 - 5895343
Alignment:
| Q |
40 |
tcatttggtactttacattctaaatgtttgatagtgaacaaattcagaagaaaagaga |
97 |
Q |
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| T |
5895400 |
tcatttggtactttacattctaactatttgatagtgatcaaattcagatgagaagaga |
5895343 |
T |
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