View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5243_low_34 (Length: 208)
Name: NF5243_low_34
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 10378669 - 10378843
Alignment:
| Q |
18 |
gataaaagtttgaacttataatctttagggacatagtttaaaacccctcggagacaaccaaactcaactactacctatccatgaattgtcagctccgtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10378669 |
gataaaagtttgaacttataatctttagggacatagtttaaaacccctcggagacaaccaaactcaactactacctgtccatgaattgtcagctccgtga |
10378768 |
T |
|
| Q |
118 |
taatagctttaccttgttaacttcaaggtatgaagttcaaattcccttggaaccaaccataaacatgtttatact |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378769 |
taatagctttaccttgttaacttcaaggtacgaagttcaaattcccttggaaccaaccataaacatgtttatact |
10378843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University