View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_36 (Length: 204)
Name: NF5243_low_36
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 42667300 - 42667128
Alignment:
| Q |
12 |
agcagcacagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgccttcttattcttctccttttcctgatttgtt |
111 |
Q |
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| T |
42667300 |
agcagcatagacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgccttcttattcttctccttttcctgatttgtt |
42667201 |
T |
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| Q |
112 |
ctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaacatcatgtttcagctatgatt |
184 |
Q |
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| T |
42667200 |
ctattctaagaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagctatgatt |
42667128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 42667432 - 42667380
Alignment:
| Q |
15 |
agcacagacataaaagcgttgaaaattttcagagcattctgaattctgaacct |
67 |
Q |
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|||| |||||||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667432 |
agcatagacataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 42667354 - 42667311
Alignment:
| Q |
24 |
ataaaagcgttgaaaattttcagagcattctgaattctgaacct |
67 |
Q |
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| T |
42667354 |
ataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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