View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_4 (Length: 432)
Name: NF5243_low_4
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 45924510 - 45924097
Alignment:
| Q |
1 |
aagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45924510 |
aagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcacct |
45924411 |
T |
|
| Q |
101 |
tctcccacaacatatatctcatcacatgctttgtgatcaccaaggctattccctctaacttgtaattcagccacagtactttctcttattgatcccaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45924410 |
tctcccacaacatatatctcatcacatgctttgtgatcaccaaggctattccctctaacttgtaattcagccacagtactttctcttattgatcccaata |
45924311 |
T |
|
| Q |
201 |
atatcatgcccaataacgctattgcacaataccatgatgttgaatcacctctagacgaacccatgttacgttgtgctatatattatatcaataaagaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45924310 |
atatcatgcccaataacgctattgcacaataccatgatgctgaatcacctctagacgaacccatgttacgttgtgctatatattatatcaataaagaaat |
45924211 |
T |
|
| Q |
301 |
gatataacctatggtttgaagaaacaacggttaactatgtgtgtatatttataggtgtaaagaactatgttattagctggagtgaggaatacgatgtgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45924210 |
gatataacctatggtttgaagaaacaacggttaactatgtgtgtatatttataggtgtaaagaactatgttattagctggagtgaggagtacgatgtgtt |
45924111 |
T |
|
| Q |
401 |
tgatagtagtatct |
414 |
Q |
| |
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|||||||||||||| |
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| T |
45924110 |
tgatagtagtatct |
45924097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 45936458 - 45936323
Alignment:
| Q |
1 |
aagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45936458 |
aagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcacct |
45936359 |
T |
|
| Q |
101 |
tctcccacaacatatatctcatcacatgctttgtga |
136 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45936358 |
tctcccacaacatatatctcatcacatgctttgtga |
45936323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 26303318 - 26303197
Alignment:
| Q |
5 |
ccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcaccttctc |
104 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| || |||||| | || ||||||||||||||||| ||||| | ||||| || || || | |
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| T |
26303318 |
ccagggaaaacatcatcaggatcatgaatatgtggattctcttcaacaatataaggatcaccacacttttcacttattgtttgaagtgtctctccctcgc |
26303219 |
T |
|
| Q |
105 |
ccacaacatatatctcatcaca |
126 |
Q |
| |
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| ||||| |||||||||||||| |
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| T |
26303218 |
caacaacgtatatctcatcaca |
26303197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 42240157 - 42240290
Alignment:
| Q |
1 |
aagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcacct |
100 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||||||| ||||||||||| || |||||||| |||||||| ||||| | || || || ||| |
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| T |
42240157 |
aagacctggaaaaacatcatctgggtcatgaatatgtggattctcttctacaataaatggatcaccacatttttcacttattgtatgaagagtctctcct |
42240256 |
T |
|
| Q |
101 |
tctcccacaacatatatctcatcacatgctttgt |
134 |
Q |
| |
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|| | || ||||||||||||||||| ||||||| |
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| T |
42240257 |
tcacgaaccacatatatctcatcacacgctttgt |
42240290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 12631279 - 12631380
Alignment:
| Q |
1 |
aagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgtttcacct |
100 |
Q |
| |
|
|||||||||||| |||||||| || ||||| ||||| ||||| |||| |||||||| || ||| |||||| ||||| |||||||| ||||| |||||| |
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| T |
12631279 |
aagaccagggaagacatcatcagggtcatgaatatgaggattattctcaacaataaaaggatcattacacttatcactaattgtgttaagtgtctcacct |
12631378 |
T |
|
| Q |
101 |
tc |
102 |
Q |
| |
|
|| |
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|
| T |
12631379 |
tc |
12631380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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