View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5243_low_5 (Length: 407)

Name: NF5243_low_5
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5243_low_5
NF5243_low_5
[»] chr1 (17 HSPs)
chr1 (1-389)||(48153128-48153516)
chr1 (1-42)||(2820996-2821037)
chr1 (1-42)||(12800439-12800480)
chr1 (1-42)||(38328855-38328896)
chr1 (1-42)||(48594194-48594235)
chr1 (1-42)||(48598805-48598846)
chr1 (1-73)||(28371672-28371744)
chr1 (1-42)||(2821458-2821499)
chr1 (1-42)||(12800027-12800068)
chr1 (1-42)||(43755887-43755928)
chr1 (3-73)||(50164244-50164314)
chr1 (1-37)||(28371242-28371278)
chr1 (1-76)||(33631059-33631134)
chr1 (1-39)||(50164678-50164716)
chr1 (1-42)||(38328425-38328466)
chr1 (1-42)||(38469254-38469295)
chr1 (1-42)||(43756316-43756357)
[»] chr3 (25 HSPs)
chr3 (1-73)||(32473768-32473840)
chr3 (1-73)||(930402-930474)
chr3 (1-42)||(11441687-11441728)
chr3 (1-73)||(11442124-11442196)
chr3 (3-42)||(14788571-14788610)
chr3 (2-73)||(32474432-32474503)
chr3 (1-42)||(929949-929990)
chr3 (1-42)||(5113236-5113277)
chr3 (1-42)||(20586553-20586594)
chr3 (1-42)||(21166125-21166166)
chr3 (1-42)||(24394703-24394744)
chr3 (1-38)||(26006747-26006784)
chr3 (1-42)||(36992142-36992183)
chr3 (1-42)||(37017582-37017623)
chr3 (1-42)||(38000261-38000302)
chr3 (1-42)||(45000796-45000837)
chr3 (8-73)||(43521084-43521149)
chr3 (3-42)||(5113679-5113718)
chr3 (1-39)||(24394288-24394326)
chr3 (1-43)||(45000352-45000394)
chr3 (1-39)||(50766670-50766708)
chr3 (1-42)||(20586110-20586151)
chr3 (1-42)||(42257252-42257293)
chr3 (1-42)||(43104746-43104787)
chr3 (1-37)||(14788317-14788353)
[»] chr6 (10 HSPs)
chr6 (1-73)||(28983261-28983333)
chr6 (1-73)||(34717249-34717321)
chr6 (1-73)||(34717724-34717796)
chr6 (1-39)||(28535432-28535470)
chr6 (1-42)||(7635604-7635645)
chr6 (1-42)||(18290464-18290505)
chr6 (1-42)||(28982819-28982860)
chr6 (1-73)||(19062792-19062864)
chr6 (1-42)||(7635162-7635203)
chr6 (1-42)||(18290253-18290294)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-42)||(61612-61653)
[»] chr8 (8 HSPs)
chr8 (1-42)||(37657885-37657926)
chr8 (1-37)||(41714646-41714682)
chr8 (1-42)||(14197697-14197738)
chr8 (1-37)||(41715236-41715272)
chr8 (1-39)||(30846057-30846095)
chr8 (1-42)||(30846465-30846506)
chr8 (1-37)||(39439801-39439837)
chr8 (1-37)||(39440568-39440604)
[»] chr7 (11 HSPs)
chr7 (1-42)||(20560250-20560291)
chr7 (1-42)||(42901105-42901146)
chr7 (1-43)||(40641139-40641181)
chr7 (1-42)||(4179675-4179716)
chr7 (1-42)||(4180307-4180348)
chr7 (1-42)||(20559784-20559825)
chr7 (1-42)||(30414219-30414260)
chr7 (1-42)||(33140263-33140304)
chr7 (1-42)||(42900685-42900726)
chr7 (1-73)||(33139781-33139853)
chr7 (1-40)||(40640690-40640729)
[»] chr4 (10 HSPs)
chr4 (1-42)||(19860368-19860409)
chr4 (1-41)||(19860841-19860881)
chr4 (1-42)||(5235412-5235453)
chr4 (1-42)||(6934471-6934512)
chr4 (1-42)||(20175008-20175049)
chr4 (1-39)||(5235855-5235893)
chr4 (3-37)||(30213886-30213920)
chr4 (1-39)||(52532399-52532437)
chr4 (1-42)||(5259297-5259338)
chr4 (1-42)||(6933859-6933900)
[»] chr2 (11 HSPs)
chr2 (1-42)||(3705375-3705416)
chr2 (1-42)||(3705793-3705834)
chr2 (1-42)||(7994093-7994134)
chr2 (1-42)||(7994542-7994583)
chr2 (1-42)||(16681604-16681645)
chr2 (1-42)||(30899428-30899469)
chr2 (1-42)||(6610012-6610053)
chr2 (1-42)||(15562009-15562050)
chr2 (1-42)||(16903866-16903907)
chr2 (1-42)||(16992360-16992401)
chr2 (1-42)||(37996552-37996593)
[»] chr5 (10 HSPs)
chr5 (1-43)||(29759634-29759676)
chr5 (1-42)||(3595815-3595856)
chr5 (1-42)||(5620838-5620879)
chr5 (1-42)||(7858365-7858406)
chr5 (1-42)||(8321356-8321397)
chr5 (1-42)||(12330631-12330672)
chr5 (1-42)||(16996998-16997039)
chr5 (1-42)||(24027655-24027696)
chr5 (1-42)||(3596262-3596303)
chr5 (1-42)||(12330186-12330227)
[»] scaffold0508 (2 HSPs)
scaffold0508 (1-42)||(4171-4212)
scaffold0508 (1-42)||(4593-4634)
[»] scaffold0095 (1 HSPs)
scaffold0095 (1-37)||(42901-42937)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 48153128 - 48153516
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaatcttaccaggaaaagaaactattttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| || | |||||||||||||||||||||    
T  48153128 tgttcttggtttgatctaatgatcaaaaactaactttcccatattgggaaaaaagtagctttcccatgctaaacctcatcaggaaaagaaactattttag 48153227  T
Q  101 ttcaaccacaagaaaaatgtctcgtaccgtgagatattacacaaccaaaaacttgtttcaacaagtacagaaaagatcattcaaaagcaaaatttaaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  48153228 ttcaaccacaagaaaaatgtctcgtaccgtgagatattacacaaccaaaaacttatttcaacaagtacagaaaagatcgttcaaaagcaaaatttaaatt 48153327  T
Q  201 gttaagaaacatcttaacatctttaattgcgggtaacattacggatgagatgctctagggcatcgaacctagtatccacaacagctttcaccttagtttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48153328 gttaagaaacatcttaacatctttaattgcgggtaacattacggatgagatgctctagggcatcgaacctaggatccacaacagctttcaccttagtttc 48153427  T
Q  301 taccttgttgtcaaccatagtctcaagaaaggctacttgagtcctaataaaatcaaagacgggttcaattggtggtagaggtgtatcat 389  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48153428 taccttgttgtcaaccatagtctcaagagaggctacttgagtcctaataaaatcaaagacgggttcaattggtggtagaggtgtatcat 48153516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2821037 - 2820996
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  2821037 tgttcttggtttgatctaatggtcaaaaactaactttcccat 2820996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12800439 - 12800480
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  12800439 tgttcttggtttgatctaatggtcaaaaactaactttcccat 12800480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38328855 - 38328896
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  38328855 tgttcttggtttgatctaatgattaaaaactaactttcccat 38328896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48594194 - 48594235
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  48594194 tgttcttggtttgatctaatggtcaaaaactaactttcccat 48594235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48598805 - 48598846
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  48598805 tgttcttggtttgatctaatggtcaaaaactaactttcccat 48598846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28371672 - 28371744
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    |||| |||||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  28371672 tgtttttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 28371744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2821458 - 2821499
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  2821458 tgttcttggtttgatctaatggtcaaaaattaactttcccat 2821499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12800068 - 12800027
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  12800068 tgtttttggtttgatctaatggtcaaaaactaactttcccat 12800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43755928 - 43755887
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  43755928 tgttcttggtttgatctaatggttaaaaactaactttcccat 43755887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 50164314 - 50164244
Alignment:
Q  3 ttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||       |||| ||||||||||||||    
T  50164314 ttcttggtttgatctaatggtcataaactaactttcccatagtgggaaaaaagtagttttcccatgctaaa 50164244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28371278 - 28371242
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  28371278 tgttcttggtttgatctaatggtcaaaaactaacttt 28371242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33631059 - 33631134
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaatct 76  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||  |||       |||| |||||||||||||||||    
T  33631059 tgttcttcgtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtagttttcccatgctaaatct 33631134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 50164678 - 50164716
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  50164678 tgttcttgatttgatctaatggtcaaaaactaactttcc 50164716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38328466 - 38328425
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||| ||||    
T  38328466 tgttcttggtttgatctaatggttaaaaactaacttttccat 38328425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38469254 - 38469295
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||| |||||||||||| | ||||||||||||||||||    
T  38469254 tgttcttgatttgatctaatggttaaaaactaactttcccat 38469295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43756316 - 43756357
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  43756316 tgttcttggtttgatttaatggttaaaaactaactttcccat 43756357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32473840 - 32473768
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||       |||||||||||||||||||    
T  32473840 tgttcttggtttgatctaatggtcaaaaactaactttcccatagtgggaaaaaagtagctttcccatgctaaa 32473768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 930402 - 930474
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  930402 tgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 930474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11441728 - 11441687
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  11441728 tgttcttggtttgatctaatggtcaaaaactaactttcccat 11441687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11442124 - 11442196
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||| ||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  11442124 tgttctttgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 11442196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 14788571 - 14788610
Alignment:
Q  3 ttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14788571 ttcttggtttgatctaatggtcaaaaactaactttcccat 14788610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 32474432 - 32474503
Alignment:
Q  2 gttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    |||||| ||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  32474432 gttcttcgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 32474503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 929990 - 929949
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  929990 tgttattggtttgatctaatggtcaaaaactaactttcccat 929949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5113277 - 5113236
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  5113277 tgttcttggtttgatctaatggttaaaaactaactttcccat 5113236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20586553 - 20586594
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  20586553 tgttcttggtttgatctaatggttaaaaactaactttcccat 20586594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21166125 - 21166166
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  21166125 tgttcttggtttgatctaatggtcaaaaactaattttcccat 21166166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24394703 - 24394744
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  24394703 tgttcttggtttgatctaatggttaaaaactaactttcccat 24394744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26006747 - 26006784
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttc 38  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26006747 tgttcttggtttgatctaatggtcaaaaactaactttc 26006784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36992142 - 36992183
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  36992142 tgttcttggtttgatctaatggttaaaaactaactttcccat 36992183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37017582 - 37017623
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  37017582 tgttcttggtttgatctaatggttaaaaactaactttcccat 37017623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38000261 - 38000302
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  38000261 tgttcttggtttgatctaatggtcaaaaactaacttttccat 38000302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45000796 - 45000837
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  45000796 tgttcttggtttgatctaatggttaaaaactaactttcccat 45000837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 43521149 - 43521084
Alignment:
Q  8 ggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    |||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  43521149 ggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 43521084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 5113679 - 5113718
Alignment:
Q  3 ttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  5113679 ttcttggtttgatctaatggttaaaaactaactttcccat 5113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24394326 - 24394288
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  24394326 tgttcttggtttgatctaatggttaaaaactaactttcc 24394288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45000394 - 45000352
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccata 43  Q
    |||||||| |||||||||||| | |||||||||||||||||||    
T  45000394 tgttcttgatttgatctaatggttaaaaactaactttcccata 45000352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50766708 - 50766670
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  50766708 tgttcttggtttgatctaatggtcaaaaattaactttcc 50766670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20586151 - 20586110
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||| |||||||||||| | ||||||||||||||||||    
T  20586151 tgttcttgatttgatctaatggttaaaaactaactttcccat 20586110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42257293 - 42257252
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||    
T  42257293 tgttcttggtttgatttaatggtcaaaaactaacttttccat 42257252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43104746 - 43104787
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  43104746 tgttcttcgtttgatctaatggttaaaaactaactttcccat 43104787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14788353 - 14788317
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  14788353 tgttcttggtttgttctaatggtcaaaaactaacttt 14788317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28983261 - 28983333
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  28983261 tgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 28983333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34717321 - 34717249
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||       |||||||||||||||||||    
T  34717321 tgttcttgatttgatctaatgatcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 34717249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34717724 - 34717796
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||       |||||||||||||||||||    
T  34717724 tgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaa 34717796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28535432 - 28535470
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  28535432 tgttcttggtttgatctaatggtcaaaaactaactttcc 28535470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7635604 - 7635645
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  7635604 tgttcttggtttgatctaatggttaaaaactaactttcccat 7635645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18290464 - 18290505
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  18290464 tgttcttggtttgatctaatggttaaaaactaactttcccat 18290505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28982860 - 28982819
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  28982860 tgttcttggtttgatcgaatggtcaaaaactaactttcccat 28982819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19062792 - 19062864
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    |||| |||||||||||||||| |||||||||||||||| |||  |||       |||||||||||||||||||    
T  19062792 tgtttttggtttgatctaatggtcaaaaactaactttctcatggtgggaaaaaagtagctttcccatgctaaa 19062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7635203 - 7635162
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  7635203 tgttcttagtttgatctaatggttaaaaactaactttcccat 7635162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18290294 - 18290253
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  18290294 tgttcttggtttgatctaatggttaaaaattaactttcccat 18290253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 61653 - 61612
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  61653 tgttcttggtttgatctaatggtcaaaaactaactttcccat 61612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37657926 - 37657885
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  37657926 tgttcttggtttgatctaatggtcaaaaactaactttcccat 37657885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41714682 - 41714646
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  41714682 tgttcttggtttgatctaatgatcaaaaactaacttt 41714646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14197738 - 14197697
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  14197738 tgttcttgctttgatctaatggtcaaaaactaactttcccat 14197697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41715236 - 41715272
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  41715236 tgttcttggtttgatctaatggtcaaaaactaacttt 41715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30846095 - 30846057
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  30846095 tgttcttggtttgatctaatggttaaaaactaactttcc 30846057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30846465 - 30846506
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||| ||||||||    
T  30846465 tgttcttggtttgatctaatggttaaaaactaattttcccat 30846506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39439837 - 39439801
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||||||||||  |||||||||||||||    
T  39439837 tgttcttggtttgatctaatagtcaaaaactaacttt 39439801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39440568 - 39440604
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  39440568 tgttcttggtttgatttaatggtcaaaaactaacttt 39440604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20560250 - 20560291
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  20560250 tgttcttggtttgatctaatggtcaaaaactaactttcccat 20560291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42901105 - 42901146
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  42901105 tgttcttggtttgatctaatggtcaaaaactaactttcccat 42901146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40641139 - 40641181
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccata 43  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  40641139 tgttcttgatttgatctaatggtcaaaaactaactttcccata 40641181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4179716 - 4179675
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  4179716 tgttcttggtttgatctaatggtcaaatactaactttcccat 4179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4180307 - 4180348
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  4180307 tgttcttagtttgatctaatggtcaaaaactaactttcccat 4180348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20559825 - 20559784
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  20559825 tgttcttggtttgatttaatggtcaaaaactaactttcccat 20559784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30414260 - 30414219
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  30414260 tgttcttggtttgatctaatggttaaaaactaactttcccat 30414219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33140263 - 33140304
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  33140263 tgttcttagtttgatctaatggtcaaaaactaactttcccat 33140304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42900726 - 42900685
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  42900726 tgttcttgatttgatctaatggtcaaaaactaactttcccat 42900685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33139853 - 33139781
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccatattggnnnnnnngtagctttcccatgctaaa 73  Q
    ||||||||||||||||||||| |||||||| ||||||| |||  |||       |||||||||||||||||||    
T  33139853 tgttcttggtttgatctaatggtcaaaaaccaactttctcatggtggaaaaaaagtagctttcccatgctaaa 33139781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40640729 - 40640690
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttccc 40  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  40640729 tgttcttggtttgatttaatgattaaaaactaactttccc 40640690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19860409 - 19860368
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  19860409 tgttcttggtttgatctaatggtcaaaaactaactttcccat 19860368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19860841 - 19860881
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttccca 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  19860841 tgttcttggtttgatctaatggtcaaaaactaactttccca 19860881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5235453 - 5235412
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  5235453 tgttcttggtttgatctaatggttaaaaactaactttcccat 5235412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6934471 - 6934512
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  6934471 tgttcttggtttgatctaatggttaaaaactaactttcccat 6934512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20175049 - 20175008
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  20175049 tgttcttggtttgatctaatggttaaaaactaactttcccat 20175008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5235855 - 5235893
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  5235855 tgttcttggtttgatctaatggttaaaaactaactttcc 5235893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 30213886 - 30213920
Alignment:
Q  3 ttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||||||||| |||||||||||||||    
T  30213886 ttcttggtttgatctaatggtcaaaaactaacttt 30213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52532399 - 52532437
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcc 39  Q
    |||||||||||||||||| || |||||||||||||||||    
T  52532399 tgttcttggtttgatctactggtcaaaaactaactttcc 52532437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5259297 - 5259338
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  5259297 tgttcttgatttgatctaatggtcgaaaactaactttcccat 5259338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6933900 - 6933859
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||| ||||    
T  6933900 tgttcttggtttgatctaatggttaaaaactaacttttccat 6933859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3705416 - 3705375
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  3705416 tgttcttggtttgatctaatggtcaaaaactaactttcccat 3705375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3705793 - 3705834
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  3705793 tgttcttggtttgatctaatggtcaaaaactaactttcccat 3705834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7994134 - 7994093
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  7994134 tgttcttggtttgatctaatggttaaaaactaactttcccat 7994093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7994542 - 7994583
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  7994542 tgttcttggtttgatctaatggttaaaaactaactttcccat 7994583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16681645 - 16681604
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  16681645 tgttcttggtttgatctaatggccaaaaactaactttcccat 16681604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30899469 - 30899428
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  30899469 tgttcttggtttgatctaatggttaaaaactaactttcccat 30899428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6610012 - 6610053
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  6610012 tgttcttggtttaatctaatggttaaaaactaactttcccat 6610053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15562009 - 15562050
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  15562009 tgttcttggtttaatctaatggttaaaaactaactttcccat 15562050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16903866 - 16903907
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  16903866 tgttcttagtttgatctaatggttaaaaactaactttcccat 16903907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16992360 - 16992401
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  16992360 tgttcttagtttgatctaatggttaaaaactaactttcccat 16992401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37996552 - 37996593
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    |||||||| |||||||||||| | ||||||||||||||||||    
T  37996552 tgttcttgatttgatctaatggttaaaaactaactttcccat 37996593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29759676 - 29759634
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccata 43  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  29759676 tgttcttggtttgatctaatggttaaaaactaactttcccata 29759634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3595856 - 3595815
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  3595856 tgttcttggtttgatctaatggttaaaaactaactttcccat 3595815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5620838 - 5620879
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  5620838 tgttcttggtttgatctaatggtcaaaaactaattttcccat 5620879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7858406 - 7858365
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  7858406 tgttcttggtttgatctaatggttaaaaactaactttcccat 7858365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8321356 - 8321397
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  8321356 tgttcttggtttgatctaatggttaaaaactaactttcccat 8321397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12330631 - 12330672
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  12330631 tgttcttggtttgatctaatggttaaaaactaactttcccat 12330672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16996998 - 16997039
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  16996998 tgttcttcgtttgatctaatggtcaaaaactaactttcccat 16997039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24027655 - 24027696
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  24027655 tgttcttggtttgatctaatggttaaaaactaactttcccat 24027696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3596262 - 3596303
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||| ||||||||    
T  3596262 tgttcttggtttgatctaatggttaaaaactaattttcccat 3596303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12330227 - 12330186
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  12330227 tgttcttggtttgatctaatggttaaaaattaactttcccat 12330186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4212 - 4171
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  4212 tgttcttggtttgatctaatggttaaaaactaactttcccat 4171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4593 - 4634
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaactttcccat 42  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  4593 tgttcttggtttgatctaattgttaaaaactaactttcccat 4634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42901 - 42937
Alignment:
Q  1 tgttcttggtttgatctaatgatcaaaaactaacttt 37  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  42901 tgttcttggtttgatttaatggtcaaaaactaacttt 42937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University