View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_9 (Length: 340)
Name: NF5243_low_9
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 29557867 - 29557568
Alignment:
| Q |
4 |
aactataaagcactcacacagacaacggacacaacactgacactagtagtaattgaatgtaatcaaatgtgtcggggtcgtattcatatctacagagcta |
103 |
Q |
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| T |
29557867 |
aactataaagcactcacacagacaacggacacaacactgacactagtagtaattgaatgtaatcaaatgtgtcggg-tcgtattcatatctacagagcta |
29557769 |
T |
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| Q |
104 |
atcaattcatgactggtttaaaaacaaacgaactcaaacaattccatcacctgtgaaacaacagaaaaataatcattttgctgcggattactcatctgcg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29557768 |
atcaattcatgactggtttaaaaacaaacgaactcaaacaattccatcacctgtgaaacaacagaaaaataatcattttgctgcggattactcctctgcg |
29557669 |
T |
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| Q |
204 |
aaggcatcggactagatccaaacccaacatacttcccaccctgagaaggcggaagtccttcaggcctcgactcattctccgccatcttcttcgcaaaaaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29557668 |
aaggcatcggactagatccaaacccaacatacttcccaccctgcgaaggcggaagtccttcaggcctcgactcattctccgccatcttcttcgcaaaaaa |
29557569 |
T |
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Back To:
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 40087941 - 40088032
Alignment:
| Q |
212 |
ggactagatccaaacccaacatacttcccaccctgagaaggcggaagtccttcaggcctcgactcattctccgccatcttcttcgcaaaaaa |
303 |
Q |
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|||||||||||||| ||||||||||||||||| || || || ||||| || || || ||||| ||||||||||||||||||||||| ||||| |
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| T |
40087941 |
ggactagatccaaatccaacatacttcccaccttgcgacggaggaagcccctccggtctcgattcattctccgccatcttcttcgcgaaaaa |
40088032 |
T |
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