View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5244-Insertion-2 (Length: 992)
Name: NF5244-Insertion-2
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5244-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 937; Significance: 0; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 937; E-Value: 0
Query Start/End: Original strand, 8 - 991
Target Start/End: Original strand, 10993603 - 10994586
Alignment:
| Q |
8 |
cttatataaaaaatatttgaacaacaatgcatatgttgtttgtatgggtttcctgtagtcgctggtcatcactaaaacagttgagtaccaatgcaaatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993603 |
cttatataaaaaatatttgaacaacaatgcatatgttgtttgtatgggtttcctgtagtcgctggtcatcactaaaacagttgagtaccaatgcaaatga |
10993702 |
T |
|
| Q |
108 |
ataacaaatgtactcatctattagaaacagaaacactgaatgaatcatgctactaatgactatccaccagaaacactggtcattatgccttttgagcgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10993703 |
ataacaaatgtactcatctattagaaacagaaacactgaatgaatcatgctactaatgactatcca---gaaacactggtcattatgccttttgagcgct |
10993799 |
T |
|
| Q |
208 |
gcaaatggtgcttcggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993800 |
gcaaatggtgcttcggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaa |
10993899 |
T |
|
| Q |
308 |
gtaacaattgagaatgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtcctt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993900 |
gtaacaattgagaatgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtcctt |
10993999 |
T |
|
| Q |
408 |
caatggataaagtgattgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10994000 |
caatggataaagtgattgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgt |
10994099 |
T |
|
| Q |
508 |
tagagatgatagtactagcgtttcttggtcttcctctggtgcatcaagaattgattccatggaacaagcctaataatcccacccaatttgcatcgaactt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10994100 |
tagagatgatagtactagcgtttcttggtcttcctctggtgcatcaagaattgattccatggaacaagcctaataatccctcccaatttgcatcgaactt |
10994199 |
T |
|
| Q |
608 |
cttggttcatggcatttctaaccaatcaaaattacactatgagtatcgatagcaatgtaagacaaaataaaacagatgcaatcagactgatataatattg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10994200 |
cttggttcatggcatttctaaccaatcaaaattacactatgagtatcgatagcaatgtaagacaaaataaaacagatgcaatcagactgatataatattg |
10994299 |
T |
|
| Q |
708 |
attacttgttagtgttttctctatttatttttcattatctgcaagttaaactgttgtcaaatgtattttacatacttataaatgtcctcctttatttttt |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10994300 |
attacttgttagtgttttctctatttatttttcattatctgcaagttaaactgttgttaaatgtattttacatacttataaatgtcctcctttatttttt |
10994399 |
T |
|
| Q |
808 |
ggtgaaaaaagggtctaaagaccctaacaactggaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaataggaacaa |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10994400 |
ggtgaaaaaagggtctaaagaccctaacaactggaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaataggaacaa |
10994499 |
T |
|
| Q |
908 |
agtcaaatac-aaaacattactctagtcaaagtaacatacaaaaat-aaagtaaccg-acattttaccatttacactattatttaca |
991 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
10994500 |
agtcaaatacaaaaacattactctagtcaaagtaacatacaaaaataaaagtaaccgaacatgttaccatttacactattatttaca |
10994586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 222 - 572
Target Start/End: Original strand, 11005130 - 11005480
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11005130 |
ggaagaacttgaatccattggctgagcaatcttgccaaatttatttccctttttggatttatggtcagttacatgatggaagtgaagtaacaattgagaa |
11005229 |
T |
|
| Q |
322 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11005230 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtg |
11005329 |
T |
|
| Q |
422 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagta |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||| || || |
|
|
| T |
11005330 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatctaccagctgaggattttagagatggtaata |
11005429 |
T |
|
| Q |
522 |
ctagcgtttcttggtcttcctctggtgcatcaagaattgattccatggaac |
572 |
Q |
| |
|
|||| ||||||||||||||||| | |||||| || ||||| |||||||| |
|
|
| T |
11005430 |
ctagaagttcttggtcttcctctgatacatcaataaatgatttcatggaac |
11005480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 222 - 490
Target Start/End: Complemental strand, 11010892 - 11010624
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
11010892 |
ggaagaacttgaatgcattggctgagcaatccagccaaatttattttcctttttggatttatgataaatttcatgatggaagtgaagtaacaattgagaa |
11010793 |
T |
|
| Q |
322 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtg |
421 |
Q |
| |
|
||||||||| | |||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11010792 |
cgacacagatcaggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagtt |
11010693 |
T |
|
| Q |
422 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat |
490 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||| || ||||||||||||||| ||| |||||||||| |
|
|
| T |
11010692 |
ttggagatgcttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagat |
11010624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 313 - 568
Target Start/End: Complemental strand, 10901564 - 10901309
Alignment:
| Q |
313 |
aattgagaatgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10901564 |
aattgagaatgacacagatgaagaaatgaaattggcaaagaaaacgatgattgtggcattatggtgtactcagacaaaacctagtgatcgtccttcaatg |
10901465 |
T |
|
| Q |
413 |
gataaagtgattgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagag |
512 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||| || ||| |
|
|
| T |
10901464 |
gataaagtgattgagatgcttgcataagaagatggggatttgcaaatgcctaagaagccttacctttatccacaagatctaccagctgaggatttttgag |
10901365 |
T |
|
| Q |
513 |
atgatagtactagcgtttcttggtcttcctctggtgcatcaagaattgattccatg |
568 |
Q |
| |
|
|||||| |||||| ||| |||| |||||||| | |||||| || ||||| |||| |
|
|
| T |
10901364 |
atgataatactagaagttcgtggttttcctctgatacatcaataaatgatttcatg |
10901309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 226 - 517
Target Start/End: Complemental strand, 10979322 - 10979031
Alignment:
| Q |
226 |
gaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaatgac |
325 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
10979322 |
gaacttgaatgcaatggctgagcaatctagccaaatttatttccctttttggatatatgatcgattacatgatggaagggaagtaacgattgaaaatgac |
10979223 |
T |
|
| Q |
326 |
acagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattg |
425 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||| | | |
|
|
| T |
10979222 |
acagatcaggaaataaaattggcaaagaaaatgatgattgtggctttgtggtgtatacagacaaaacccgacgaccgtccttcaatggataaagtgttgg |
10979123 |
T |
|
| Q |
426 |
agatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgat |
517 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| | ||||||| ||||| ||| |||||| |||||||| |
|
|
| T |
10979122 |
agatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagaggatgttggagatgat |
10979031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 222 - 490
Target Start/End: Complemental strand, 10903431 - 10903163
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || |
|
|
| T |
10903431 |
ggaagaacttgaatgcattggccgaacaatctagccaaatttatttccctttttggatttatgatcgattacatgatggaagggaagtaactattgaaaa |
10903332 |
T |
|
| Q |
322 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtg |
421 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||| ||||| || |||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
10903331 |
tgacacagatcaggaaatgaaattggcaaagaaaatgatgaccgtggctttgtggtgtatacaaacaaaacccgaggatcgtccttcaatggataaagtt |
10903232 |
T |
|
| Q |
422 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat |
490 |
Q |
| |
|
| |||||||||||| ||||||||||||| || ||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
10903231 |
ttggagatgcttgaaaaagaagatggggacttacaaattcctaataagccttacttttgtccacaagat |
10903163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 222 - 472
Target Start/End: Complemental strand, 11033183 - 11032933
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||| | |||||| ||| |
|
|
| T |
11033183 |
ggaagaacttgaatgcattggctgatcaatcaagccagatttatttccctttttgggtttatgatcagttacaagatggaagggaaatgacaattctgaa |
11033084 |
T |
|
| Q |
322 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtg |
421 |
Q |
| |
|
||| ||| || | ||||||||||||||||||||||||||||| ||||| || |||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
11033083 |
tgatacaaatcatgaaatgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtcctccaatggataaagtg |
11032984 |
T |
|
| Q |
422 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagcct |
472 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11032983 |
ttggagatgcttgaagaagaagatgaagatttgcaaatgcctaataagcct |
11032933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 222 - 518
Target Start/End: Complemental strand, 10914591 - 10914295
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || |
|
|
| T |
10914591 |
ggaagaatttgaatgcattggctgatcaatctagtgaaatttatttccctttttggatttatgatcgattacatgatggaagggaagtaactattgaaaa |
10914492 |
T |
|
| Q |
322 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtg |
421 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| || || |||||||| || |||||||| ||||||||||||||||| ||||| |
|
|
| T |
10914491 |
tgacacagatcaggaaatgaaattggcaaagaaaatgatgattgtagctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggaaaaagtt |
10914392 |
T |
|
| Q |
422 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgata |
518 |
Q |
| |
|
| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||||| |||| ||| |||||| ||||||||| |
|
|
| T |
10914391 |
ttggagatgcttgaagaagaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccaccaacagcagatgttggagatgata |
10914295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 222 - 489
Target Start/End: Complemental strand, 11007730 - 11007463
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
||||||||||| ||| ||| |||| ||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
11007730 |
ggaagaacttggatgtattggctggtcaatctagccaggtttatttccctttttgggtttatgatcagttacaagatggaagagaaataacaattgagaa |
11007631 |
T |
|
| Q |
322 |
tgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtg |
421 |
Q |
| |
|
|| ||| || | || |||||||||||||||||||||||||| ||||| || ||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
11007630 |
tgctacaaatcatgagatgaaattggcaaagaaaatgatgatagtggctttgtggtgtattcaagcgaaacctagtgatcgtcctccaatggataaagtg |
11007531 |
T |
|
| Q |
422 |
attgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaaga |
489 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||| || ||||||| |
|
|
| T |
11007530 |
ttggagatgcttgaagaagaagatgaagatttgcaaatgcctaatcagcctgaccttgatgcacaaga |
11007463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 222 - 490
Target Start/End: Original strand, 11028715 - 11028985
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaa--caattgag |
319 |
Q |
| |
|
||||||| | ||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| | ||||| |
|
|
| T |
11028715 |
ggaagaattagaatgcattggctgaacaatctagccaaatttatttccctttctggatttatgatcgattacatgatggaagggaagtatatctattgaa |
11028814 |
T |
|
| Q |
320 |
aatgacacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaag |
419 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| || ||| || |||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
11028815 |
aatgacacagatcaggaaatgaaattggcaaagaaaatgatgactgcggctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggataaag |
11028914 |
T |
|
| Q |
420 |
tgattgagatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagat |
490 |
Q |
| |
|
| | ||||||||||||||||||||||| || |||||||| ||||||||||||||| ||| ||| |||||| |
|
|
| T |
11028915 |
ttttggagatgcttgaagaagaagatggagacttgcaaattcctaataagccttacttttgtccgcaagat |
11028985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 324 - 526
Target Start/End: Complemental strand, 10932870 - 10932667
Alignment:
| Q |
324 |
acacagatgaagaaatgaaattggcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgat |
423 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| ||||| || |||||||| || ||||| || ||||||||||||||||| ||||| | |
|
|
| T |
10932870 |
acacagatcaggaaatgaaattggcaaagaaaatgatgatcgtggctttgtggtgtatacaaacaaatcccgaggatcgtccttcaatggaaaaagtttt |
10932771 |
T |
|
| Q |
424 |
tg-agatgcttgaagaagaagatggggatttgcaaatgcctaataagccttacctttatccacaagatataccagcagacgatgttagagatgatagtac |
522 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||| ||||| ||| |||||| ||||| |||||| |
|
|
| T |
10932770 |
aggagatgcttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagaggatgttggagataatagtag |
10932671 |
T |
|
| Q |
523 |
tagc |
526 |
Q |
| |
|
|||| |
|
|
| T |
10932670 |
tagc |
10932667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 10974248 - 10974142
Alignment:
| Q |
222 |
ggaagaacttgaatgcattagctgagcaatctagccaaatttattttcctttttggatttatgatcagttacatgatggaagtgaagtaacaattgagaa |
321 |
Q |
| |
|
||||||| ||||||||||| || || |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| | ||||| || |
|
|
| T |
10974248 |
ggaagaatttgaatgcattggccgatcaatctagccaaatttatttccctttctggatttatgatcgattacatgatggaagggaagtatctattgaaaa |
10974149 |
T |
|
| Q |
322 |
tgacaca |
328 |
Q |
| |
|
||||||| |
|
|
| T |
10974148 |
tgacaca |
10974142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 10931407 - 10931486
Alignment:
| Q |
8 |
cttatataaaaaatatttgaacaacaatgcatatgttgtttgtatgggtttcctgtagtcgctggtcatcactaaaacag |
87 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| |||| || ||| ||| || ||||||||||||| |
|
|
| T |
10931407 |
cttatatataaaatatttgaacaacaatgtatatgttgtttgtatggatttcttgcagttgctagtaatcactaaaacag |
10931486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 841 - 914
Target Start/End: Complemental strand, 11006908 - 11006834
Alignment:
| Q |
841 |
gaaaccacaaggaaagacaacagctgaagattcagcaaaaacaacgttcaaaatgaaa-taggaacaaagtcaaa |
914 |
Q |
| |
|
||||| |||||||||||||||| | || | ||||| ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
11006908 |
gaaactacaaggaaagacaacaaccaaataatcagcgaaaacaacgttcaaaatgaaagtaggaacaaaatcaaa |
11006834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 9348803 - 9348872
Alignment:
| Q |
368 |
gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||| ||||| ||||||| || |||||||| |||| |
|
|
| T |
9348803 |
gcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaataaagtaatagagatgctcgaag |
9348872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 9234322 - 9234385
Alignment:
| Q |
374 |
tggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
9234322 |
tggtgtattcagttgaaaccgagtgatcgtccttcaatgaacaaagtagttgagatgcttgaag |
9234385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 11031069 - 11031014
Alignment:
| Q |
107 |
aataacaaatgtactcatctattagaaacagaaacactgaatgaatcatgctactaatga |
166 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
11031069 |
aataacaaatgtacttatc----agaaacagaaacactgagtggatcatgctactaatga |
11031014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 9255310 - 9255351
Alignment:
| Q |
396 |
gtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
9255310 |
gtgatcgtccctcaatgaataaagtgatagagatgcttgaag |
9255351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 9318572 - 9318613
Alignment:
| Q |
396 |
gtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
9318572 |
gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag |
9318613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 9319730 - 9319689
Alignment:
| Q |
396 |
gtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
9319730 |
gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag |
9319689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 9350047 - 9350006
Alignment:
| Q |
396 |
gtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
9350047 |
gtgatcgtccttcaatgaacaaagtgatagagatgcttgaag |
9350006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 9384078 - 9384009
Alignment:
| Q |
368 |
gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| ||||| | ||||| ||||||||||||||| |
|
|
| T |
9384078 |
gcattttggtgtattcagttgaaaccgagtgatcgtcctacaatgaacaaagtagttgagatgcttgaag |
9384009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 15927450 - 15927519
Alignment:
| Q |
368 |
gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| | | |||||| ||||||||||||| |
|
|
| T |
15927450 |
gcattatggtgtattcaattaaaaccaagtgatcgtccttcaatgaacagagtgatagagatgcttgaag |
15927519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 9159448 - 9159379
Alignment:
| Q |
368 |
gcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaag |
437 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||| ||||| | ||||| || |||||||| |||| |
|
|
| T |
9159448 |
gcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaacaaagtaatagagatgctcgaag |
9159379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University