View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5244-Insertion-5 (Length: 650)

Name: NF5244-Insertion-5
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5244-Insertion-5
NF5244-Insertion-5
[»] chr7 (4 HSPs)
chr7 (250-597)||(31922472-31922817)
chr7 (8-131)||(31922211-31922334)
chr7 (133-189)||(31922356-31922412)
chr7 (614-650)||(31922818-31922854)
[»] chr1 (2 HSPs)
chr1 (283-353)||(17109147-17109217)
chr1 (251-356)||(30708685-30708791)
[»] chr2 (2 HSPs)
chr2 (135-176)||(17906196-17906237)
chr2 (300-353)||(17905478-17905531)
[»] chr6 (2 HSPs)
chr6 (313-355)||(28298983-28299025)
chr6 (313-355)||(28513048-28513090)
[»] chr8 (3 HSPs)
chr8 (279-356)||(33892515-33892592)
chr8 (313-355)||(32496992-32497034)
chr8 (279-356)||(30433886-30433963)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 250 - 597
Target Start/End: Original strand, 31922472 - 31922817
Alignment:
Q  250 caataaaatttcaaagcaaatggcagaaaatgggagcagctatggattgtcaatctagttgggatgtctagcttctccttgatgccttcctttctctctt 349  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||    
T  31922472 caataaaatttcaaagcagatggcagaagatgggagcagctatggattgccaatctagttggcatatctagcttctccttgatgccttcctttctctctt 31922571  T
Q  350 gattcattnnnnnnnnntcatttatcataaaagtatttaagtataagctatttttattaagnnnnnnnnngtcaaaactttttatataaactacgggtta 449  Q
    ||||||||         ||||||||||||||||||||||||||||||||||||||||||||         |||||| |||| |||||||||||||||||     
T  31922572 gattcattaaaaaaaaatcatttatcataaaagtatttaagtataagctatttttattaagaaaaaaaaagtcaaa-ctttatatataaactacgggttg 31922670  T
Q  450 ttttcatcaactatcattgagagtctataaaaatgtcataagttgtttctacaagggatatagaaacaaaaaatcccttcttctagtagacaagttgaaa 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||    
T  31922671 ttttcatcaactatcattgagagtctataaaaatgtcataagttgtttctacaagggatatatagaaacaaaatcccttcttctagtagacaagttgaaa 31922770  T
Q  550 taaatacaaacaaccagaccatgctattgacttgttgaatgcatgcat 597  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  31922771 taaatacaaacaaccagaccatgcta-tgacttgttgaatgcatgcat 31922817  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 31922211 - 31922334
Alignment:
Q  8 cctacaaaacctagtctaaggtgcaatcactcctccagtttaataaaggtcttctattggaatattagaggttttggaaccgatggcacaactattttac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||     
T  31922211 cctacaaaacctagtctaaggtgcaatcactcctccagtttaataaaggtcttctattgaaatattagaggttttggaaccggtggcacaattgttttat 31922310  T
Q  108 aaatgttgtctggtggatttcttt 131  Q
    |||||||||| ||||| |||||||    
T  31922311 aaatgttgtccggtgggtttcttt 31922334  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 31922356 - 31922412
Alignment:
Q  133 acgatttttacagggacaaacatggtcttccgaattttagattctcatagttccctc 189  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  31922356 acgattttcacaggaacaaacatggtcttccgaattttagattcccatagttccctc 31922412  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 650
Target Start/End: Original strand, 31922818 - 31922854
Alignment:
Q  614 acacatgataatacattattttcaacaaaatctagtc 650  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31922818 acacatgaaaatacattattttcaacaaaatctagtc 31922854  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 17109147 - 17109217
Alignment:
Q  283 gagcagctatggattgtcaatctagttgggatgtctagcttctccttgatgccttcctttctctcttgatt 353  Q
    |||||||||||   |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  17109147 gagcagctatgtggtgtcaatctagttgggatgtctagcttctctttgatgcattccttactctcttgatt 17109217  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 30708791 - 30708685
Alignment:
Q  251 aataaaatttcaaagcaaatggcagaaaatgggagcagctatggattgtcaatc-tagttgggatgtctagcttctccttgatgccttcctttctctctt 349  Q
    |||||||||||| ||||  ||| |||  |||| | |||||||||  |||||| | ||||||||||||||| |||||| ||||| ||||| || |||||||    
T  30708791 aataaaatttcagagcaggtggtagaggatggcaacagctatggtgtgtcaaccctagttgggatgtctaacttctctttgataccttctttgctctctt 30708692  T
Q  350 gattcat 356  Q
    |||||||    
T  30708691 gattcat 30708685  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 17906237 - 17906196
Alignment:
Q  135 gatttttacagggacaaacatggtcttccgaattttagattc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17906237 gatttttacagggacaaacatggtcttccgaattttagattc 17906196  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 17905531 - 17905478
Alignment:
Q  300 caatctagttgggatgtctagcttctccttgatgccttcctttctctcttgatt 353  Q
    |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  17905531 caatctagttgggatgtctatcttctcctttatgctttccttactctcttgatt 17905478  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 28299025 - 28298983
Alignment:
Q  313 atgtctagcttctccttgatgccttcctttctctcttgattca 355  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  28299025 atgtgtagcttctccttgatgccttccttgctctcttgattca 28298983  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 28513048 - 28513090
Alignment:
Q  313 atgtctagcttctccttgatgccttcctttctctcttgattca 355  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  28513048 atgtgtagcttctccttgatgccttccttgctctcttgattca 28513090  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 33892592 - 33892515
Alignment:
Q  279 atgggagcagctatggattgtcaatctagttgggatgtctagcttctccttgatgccttcctttctctcttgattcat 356  Q
    |||||||||| ||| |  ||||| ||||||| ||||||||| |||| ||||||||  |||||| ||||||||||||||    
T  33892592 atgggagcagttatcgggtgtcagtctagttaggatgtctaacttccccttgatgtattccttactctcttgattcat 33892515  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 32496992 - 32497034
Alignment:
Q  313 atgtctagcttctccttgatgccttcctttctctcttgattca 355  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||    
T  32496992 atgtctagcttctccttgatgtctttcttgctctcttgattca 32497034  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 30433886 - 30433963
Alignment:
Q  279 atgggagcagctatggattgtcaatctagttgggatgtctagcttctccttgatgccttcctttctctcttgattcat 356  Q
    ||||||||| ||||||  || |||  |||||||| |||| ||||||||||||||| ||| ||| | ||||||||||||    
T  30433886 atgggagcaactatggggtgccaacatagttggggtgtccagcttctccttgatgtctttcttgcgctcttgattcat 30433963  T

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