View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5244-Insertion-6 (Length: 614)
Name: NF5244-Insertion-6
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5244-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 592
Target Start/End: Original strand, 36451689 - 36452289
Alignment:
| Q |
8 |
agaggcgtgtaatttatttatttatttctttaaaaacaaaatatgcatcaaaatctcaatctttcaatctcaatctaacgatcactatcatgttaaccaa |
107 |
Q |
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| T |
36451689 |
agaggagtgtaatttatttatttatttctttaaaattaaaatatgcatcaaaatctcaatctttcgatctcgatctaacgaccactattatgttaaccaa |
36451788 |
T |
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| Q |
108 |
gtggattcctagagttggtcagcaaatccataagatgacataaga--------------------tgataaccatgatacaaaagcatatgcccaaaatg |
187 |
Q |
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| T |
36451789 |
gtggattcctagagttggtcagcaaatccataagatgacatattaaaaaatgcgatgatgataattgataaccatgatacaaaagcat--gcctaaaatg |
36451886 |
T |
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| Q |
188 |
agggaacacattttggggggcaaaacaaaatgacgatttctttcttcgtaaccgcgttgaagtttctaacccatttcacacggagaatctctcttatcac |
287 |
Q |
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| T |
36451887 |
agggaacacattttggggggcaaaacaaaatgacgatttctttcttcgtaaccgcgttgaagtttctaacccatttcacacggagaatctctcttatcac |
36451986 |
T |
|
| Q |
288 |
atctttaactaatataataatgacatccacgtaggtcataaaacnnnnnnnnnnnnnnnnnnnnagcttagctcattggaaataattataatgtaccaac |
387 |
Q |
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| T |
36451987 |
atctttaactaatataataatgacatccacataggtcataaaactatatatatatatatatataagcttagctcattggaaataattataatgtaccaac |
36452086 |
T |
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| Q |
388 |
agtaaaattatatagacacaatcaaccacaaacattaatatggaggactccccacctggttttcgtttctacccaacagaagaagagctagttggcttct |
487 |
Q |
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| T |
36452087 |
agtaa--ttatatatacacaatcaaccacaaacattaatatgggggattccccacctggttttcgtttctacccaacagaagaagagctagttggcttct |
36452184 |
T |
|
| Q |
488 |
atctacacaaccagttggaaggacaaaagcatgaagacataaacaaaatcatacctctcattgatatcaatggcaaagagccatggaaccttccaagtac |
587 |
Q |
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| T |
36452185 |
atctacacaaccagttggaaggacaaaagcatgaagacataaacaaaatcatacctctcattgatatcaatggcaaagagccatggaaccttccaagtac |
36452284 |
T |
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| Q |
588 |
gtaac |
592 |
Q |
| |
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| T |
36452285 |
gtaac |
36452289 |
T |
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Back To:
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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 19087817 - 19087764
Alignment:
| Q |
439 |
ccacctggttttcgtttctacccaacagaagaagagctagttggcttctatcta |
492 |
Q |
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| T |
19087817 |
ccacctggttttcgtttcttcccaactgaagaagagcttgttagcttttatcta |
19087764 |
T |
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