View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5244_high_2 (Length: 282)
Name: NF5244_high_2
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5244_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 52920286 - 52920551
Alignment:
| Q |
7 |
agaagatagtaagctaggatcctaaatcaatcaattaagttcaagagaatcagaaaaggcaaatgcccctttttgcactcgaaaaatgaattaagtgctg |
106 |
Q |
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| T |
52920286 |
agaagatagtaagctaggatcctaaatcaatcaattaagtacaagagaatcggaaaaggcaaatgcacctttttgcactcgaaaaatgaattaagtgctg |
52920385 |
T |
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| Q |
107 |
acatgccatattcatccatagatt--------gattctagctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattctttt |
198 |
Q |
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| T |
52920386 |
acatgccatattcatccatagattcatatattgattctagctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattctttt |
52920485 |
T |
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| Q |
199 |
caagcagctaattagttccatgtcaaaataatttaaaatctctccgatagttagtatactttcttc |
264 |
Q |
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| T |
52920486 |
caagcagctaattagttccatgtcaaaataatttaaaatctctctgatatttagtatactttcttc |
52920551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 35232013 - 35232274
Alignment:
| Q |
7 |
agaagatagtaagctaggatcctaaatcaatcaattaagttcaagagaatcagaaaaggcaaatgcccctttttgcactcgaaaaatgaattaagtgctg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
35232013 |
agaagatagtaagctaggatcctaaatcaatcaattaagtacaagcgaatcagaaaaggcaaatgcacctttttgcactcgaaaaacgaattaagtgctg |
35232112 |
T |
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| Q |
107 |
acatgccatattcatccatagatt--------gattctagctgttcagcaagactgcaatacaacaaattgagaagtgaaatcattaaaattattctttt |
198 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
35232113 |
acatgccatattcatccatagattcatatattgattctagctgttcagcaagactgcaatacaacaaattgataagtgaaatcattaaaattattgtttt |
35232212 |
T |
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| Q |
199 |
caagcagctaattagttccatgtcaaaataatttaaaatctctccgatagttagtatacttt |
260 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||||||| |
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| T |
35232213 |
caagcagctaattagttccatgccaaaataattcaaaatctctctgatatttagtatacttt |
35232274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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