View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5244_high_3 (Length: 236)
Name: NF5244_high_3
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5244_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10993386 - 10993607
Alignment:
| Q |
1 |
tccatttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatga |
100 |
Q |
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| T |
10993386 |
tccatttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatga |
10993485 |
T |
|
| Q |
101 |
cttacaattgtaaaatatgtgcctatttctgatttataagtatagcctttgaaccataatcagcctgctttcactcgctcccacacataaatctctacgt |
200 |
Q |
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| T |
10993486 |
cttacaattgtaaaatatgtgcctatttctgatttataagtatagcctttgaaccataatcagcctgctttcactcgctcccacacataaatctctacgt |
10993585 |
T |
|
| Q |
201 |
attgtgtataaccggaccttat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10993586 |
attgtgtataaccggaccttat |
10993607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 10931186 - 10931401
Alignment:
| Q |
5 |
tttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatgactta |
104 |
Q |
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| T |
10931186 |
tttgcttctcaatctagacaacctaggagaaatggcggagctaaaattactagacaactaactcaagagttggatgtaattcaagagttagattgactta |
10931285 |
T |
|
| Q |
105 |
caattgtaaaatatgtgcc----------tatttctgatttataagtatagcctttgaaccataatcagcctgctttcactcgctcccacacataaatct |
194 |
Q |
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| T |
10931286 |
caattgtaaaatatgtgccagaatcagcttttgtctgatttataa--atagcttttgaaccataatcagcctgctttctctcactcccacacataaattc |
10931383 |
T |
|
| Q |
195 |
ctacgtattgtgtataac |
212 |
Q |
| |
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||| ||||||||||||| |
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| T |
10931384 |
gtacatattgtgtataac |
10931401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 10907302 - 10907420
Alignment:
| Q |
5 |
tttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatgactta |
104 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
10907302 |
tttgcttctcaatctagacagcctaggagaaatggtggagctacaattactagacaactaactcaagagttagatgtaattcaagagttagaatgactta |
10907401 |
T |
|
| Q |
105 |
caattgtaaaatatgtgcc |
123 |
Q |
| |
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||||||||||||||||||| |
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| T |
10907402 |
caattgtaaaatatgtgcc |
10907420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 11026846 - 11026959
Alignment:
| Q |
5 |
tttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatgactta |
104 |
Q |
| |
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|||| ||| |||||||||||||||||||| | || || | ||||| |||||||||| | || || | |||||||||||||||||| | || ||||||| |
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| T |
11026846 |
tttgattcccaatctagacaacctaggaggactgatgcaactgcaactactagacaagtaacccacaatttagatgtaattcaagagatagattgactta |
11026945 |
T |
|
| Q |
105 |
caattgtaaaatat |
118 |
Q |
| |
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||||||| |||||| |
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| T |
11026946 |
caattgtgaaatat |
11026959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 11041549 - 11041665
Alignment:
| Q |
5 |
tttgcttctcaatctagacaacctaggagaaatggtggagttgcaattactagacaactcactcaagagttagatgtaattcaagagttggaatgactta |
104 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| ||| | |||||| ||| |||| || | ||||| |||||||| ||||| ||||| || |||||| |
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| T |
11041549 |
tttgcttctcaatctagacggcctaggaaaaatagtgcaattgcaactacgggacatctagcacaagatttagatgtgattcacgagttagattgacttg |
11041648 |
T |
|
| Q |
105 |
caattgtaaaatatgtg |
121 |
Q |
| |
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|||||| ||||||||| |
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| T |
11041649 |
aaattgtgaaatatgtg |
11041665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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