View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5244_low_1 (Length: 366)
Name: NF5244_low_1
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5244_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 13471388 - 13471059
Alignment:
| Q |
25 |
tataaataactaaattttgtcctttctatagtttctctctt-gtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactg |
123 |
Q |
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| T |
13471388 |
tataaataactaaattttgtcctttctatagtttctctctttgtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactg |
13471289 |
T |
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| Q |
124 |
gtgatgaagccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccctctct |
223 |
Q |
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| T |
13471288 |
gtgatgaagccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccatctct |
13471189 |
T |
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| Q |
224 |
gctctgtctctatctctattatggaatagttcctacaatcctaactctttcatttaacctctcttaacttgatactttctctgccccatgctcctatgct |
323 |
Q |
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| T |
13471188 |
gctctgtct------ctattatggaatagttcctccaatcctaactctctcatttaacctctcttaacttgatactttctctgccccatgctcctattct |
13471095 |
T |
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| Q |
324 |
acactctactctactgcttacatttgtcacacaaat |
359 |
Q |
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| T |
13471094 |
atactctactctactgcttacatttttcacacaaat |
13471059 |
T |
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