View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5244_low_3 (Length: 250)
Name: NF5244_low_3
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5244_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 50464227 - 50463985
Alignment:
| Q |
2 |
tttgagatttcttaaatctcttaccttgatggtaattatatattttataaaaataaattaaaaatatctaacannnnnnnnaggaagatatgagactgac |
101 |
Q |
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| T |
50464227 |
tttgagattacttaaatctcttaccttgatggtaattatatattttttaaaaataaattaaaaatatctaacattttttttaggaagatatgagactgac |
50464128 |
T |
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| Q |
102 |
acttctgaaaagagtgctgttacattcagttgttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50464127 |
acttctgaaaagagtgctgttacattcagttgttgatgcgtgcattgaataacattgaattttactaacctacaaattaaattcacacatgaaagcacct |
50464028 |
T |
|
| Q |
202 |
accagaccccatttccttgtcatattcttttgcttcatatcac |
244 |
Q |
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| T |
50464027 |
accagaccccatttccttgtcatattcttttgcttcatatcac |
50463985 |
T |
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