View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5244_low_6 (Length: 208)

Name: NF5244_low_6
Description: NF5244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5244_low_6
NF5244_low_6
[»] chr1 (7 HSPs)
chr1 (2-208)||(10993179-10993385)
chr1 (5-208)||(10930975-10931178)
chr1 (2-208)||(11026635-11026841)
chr1 (5-208)||(11041338-11041541)
chr1 (2-208)||(10907091-10907297)
chr1 (40-125)||(8962811-8962896)
chr1 (80-117)||(9300612-9300649)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 10993385 - 10993179
Alignment:
Q  2 ttgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10993385 ttgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtc 10993286  T
Q  102 ccacaatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccgg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10993285 ccacaatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccgg 10993186  T
Q  202 atagtaa 208  Q
    |||||||    
T  10993185 atagtaa 10993179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 10931178 - 10930975
Alignment:
Q  5 ggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtccca 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  10931178 ggaggtattggagttttgtcgacatctccctccaacatctgaaccaccatttgcattgttggtcgatgcatagcatgccactgaatgcaccataatccca 10931079  T
Q  105 caatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggata 204  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  10931078 caatggccattttccttgcaattttttcatccccttcatcgtcaacctgtattctcatttcctcttgatcatctataagattataaatccactccggata 10930979  T
Q  205 gtaa 208  Q
    ||||    
T  10930978 gtaa 10930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 11026841 - 11026635
Alignment:
Q  2 ttgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtc 101  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11026841 ttgggaggtattggagttttgtctatattttcctccaacatctgaaccaccatttgcattgatggtcgatccatagcatgccactgaatgcaccatagtc 11026742  T
Q  102 ccacaatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccgg 201  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11026741 ccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaattttcatttcctcttcatcatctataagattataaatccattccgg 11026642  T
Q  202 atagtaa 208  Q
    |||||||    
T  11026641 atagtaa 11026635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 11041541 - 11041338
Alignment:
Q  5 ggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtccca 104  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  11041541 ggaggtattggagttttgtcttcatctccctccaacatttgaaccaccatttgcattgatggtcgatccatagcatgccactgaatgcaccaaagtccca 11041442  T
Q  105 caatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggata 204  Q
    | ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  11041441 cgatggccatttttcttgcaattttttcatccccttcatcatcaacatgaattctcatttcctcttcatcatctataagattataaatccactccggata 11041342  T
Q  205 gtaa 208  Q
    ||||    
T  11041341 gtaa 11041338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 10907297 - 10907091
Alignment:
Q  2 ttgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtc 101  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10907297 ttgggaggtattggagttttgtcgacatctccctccaacatttgaaccaccatttgcattgatggtcgatccatagcatgccactaaatgcaccagagtc 10907198  T
Q  102 ccacaatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccgg 201  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||| |||||| |||||    
T  10907197 ccacaattgccattttccttgcaattttttcatccccttcatcatcaacatgaattctcatttcgtcttgatcatctataagattatcaatccactccgg 10907098  T
Q  202 atagtaa 208  Q
    |||||||    
T  10907097 atagtaa 10907091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 8962896 - 8962811
Alignment:
Q  40 catctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccattttccttgcaa 125  Q
    |||||| |||||||||| ||| | |||||||| ||  | |||||||||||||||||| ||||| ||||| || | |||| ||||||    
T  8962896 catctgcaccaccattttcatggctggtcgatgcactgaatgccactgaatgcaccaaagtccgacaattgctagtttctttgcaa 8962811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 9300649 - 9300612
Alignment:
Q  80 tgccactgaatgcaccatagtcccacaatggccatttt 117  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  9300649 tgccactgaatgcaccataatcccacaattgccatttt 9300612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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