View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245-Insertion-15 (Length: 202)
Name: NF5245-Insertion-15
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245-Insertion-15 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 665138 - 664942
Alignment:
| Q |
6 |
caggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaagaagtctgtactgcctagaaataaaaaagt |
105 |
Q |
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| T |
665138 |
caggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaagaagtctgtactgcctagaaataaaaaagt |
665039 |
T |
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| Q |
106 |
gactgacctgctgcaacttgcctcgcgagaatatgctcgctatggcgagtatgtgctcgcctagcgagtcgtgacagtttcagaaaatgaatcttga |
202 |
Q |
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| T |
665038 |
gactgacctgctgcaacttgcctcgcgagaatatgcttgctatggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttga |
664942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 4502184 - 4502332
Alignment:
| Q |
6 |
caggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaagaagtctgtactgcctagaaataaaaaagt |
105 |
Q |
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| T |
4502184 |
caggagcttgtggtataccatagtgcaaaagggttacctatgacatagtctttaatcaaacaatgcaaaagaagtatgtactgcctagaaatcaaaaagt |
4502283 |
T |
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| Q |
106 |
gactgacctgctgcaacttgcctcgcgagaatatgctcgctatggcgag |
154 |
Q |
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| T |
4502284 |
gactgacctgctgcaactcgcctcgcgagaatatgctcgctatggcgag |
4502332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 4502376 - 4502431
Alignment:
| Q |
147 |
atggcgagtatgtgctcgcctagcgagtcgtgacagtttcagaaaatgaatcttga |
202 |
Q |
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| T |
4502376 |
atggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttga |
4502431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 204673 - 204820
Alignment:
| Q |
7 |
aggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaagaagtctgtactgcctagaaataaaaaagtg |
106 |
Q |
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| T |
204673 |
aggagcttgtggtataccatagtgaaaaagggttacccatgacatagcctttaatcaaacaatgcaaaagaagtctgtactgcctagaaataaaaaagtg |
204772 |
T |
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| Q |
107 |
actgacctgctgcaacttgcctcgcgagaatatgctcgctatggcgag |
154 |
Q |
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| T |
204773 |
actgacctactgcaactcgactcgcgagaatatgctcgctatggcgag |
204820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 204866 - 204919
Alignment:
| Q |
149 |
ggcgagtatgtgctcgcctagcgagtcgtgacagtttcagaaaatgaatcttga |
202 |
Q |
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| T |
204866 |
ggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttga |
204919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 14120018 - 14119974
Alignment:
| Q |
110 |
gacctgctgcaacttgcctcgcgagaatatgctcgctatggcgag |
154 |
Q |
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| T |
14120018 |
gacctgctgcaactcgcctcgcgagaatatgctcgctatggcgag |
14119974 |
T |
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