View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5245-Insertion-17 (Length: 91)

Name: NF5245-Insertion-17
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5245-Insertion-17
NF5245-Insertion-17
[»] chr1 (8 HSPs)
chr1 (7-87)||(47107183-47107259)
chr1 (8-86)||(41061648-41061722)
chr1 (45-88)||(10722597-10722640)
chr1 (40-88)||(17707556-17707604)
chr1 (45-88)||(9903802-9903845)
chr1 (8-75)||(21335726-21335789)
chr1 (45-75)||(47586896-47586926)
chr1 (45-88)||(49968887-49968930)
[»] chr8 (3 HSPs)
chr8 (8-88)||(45256332-45256407)
chr8 (7-86)||(26031054-26031129)
chr8 (45-88)||(8446707-8446750)
[»] chr7 (7 HSPs)
chr7 (8-88)||(18654336-18654413)
chr7 (42-76)||(23397236-23397270)
chr7 (50-88)||(24752978-24753016)
chr7 (48-88)||(7459211-7459251)
chr7 (45-88)||(34231259-34231302)
chr7 (8-77)||(4076846-4076911)
chr7 (12-88)||(28060137-28060210)
[»] chr4 (13 HSPs)
chr4 (8-88)||(53779605-53779681)
chr4 (8-88)||(29213484-29213560)
chr4 (45-91)||(31863823-31863869)
chr4 (45-88)||(449611-449654)
chr4 (45-88)||(10563846-10563889)
chr4 (45-88)||(18107093-18107136)
chr4 (45-88)||(30274349-30274392)
chr4 (45-88)||(42823004-42823047)
chr4 (45-91)||(34005451-34005497)
chr4 (45-88)||(12881222-12881265)
chr4 (41-76)||(18935240-18935275)
chr4 (45-84)||(34322856-34322895)
chr4 (45-88)||(55854354-55854397)
[»] chr3 (7 HSPs)
chr3 (8-88)||(25341838-25341914)
chr3 (45-91)||(8695428-8695474)
chr3 (45-91)||(9047315-9047361)
chr3 (8-86)||(26845433-26845507)
chr3 (45-88)||(11639526-11639569)
chr3 (45-88)||(19221687-19221730)
chr3 (45-88)||(33121854-33121897)
[»] chr5 (4 HSPs)
chr5 (8-86)||(4922796-4922870)
chr5 (8-86)||(20209223-20209297)
chr5 (45-88)||(4416237-4416280)
chr5 (41-75)||(40089912-40089946)
[»] chr2 (4 HSPs)
chr2 (40-88)||(9393097-9393145)
chr2 (45-86)||(24313960-24314001)
chr2 (45-88)||(3000285-3000328)
chr2 (46-88)||(7075672-7075714)
[»] chr6 (3 HSPs)
chr6 (45-88)||(17079728-17079771)
chr6 (45-84)||(26526095-26526134)
chr6 (8-88)||(33722613-33722689)
[»] scaffold0007 (1 HSPs)
scaffold0007 (45-91)||(181686-181732)
[»] scaffold0179 (1 HSPs)
scaffold0179 (45-86)||(7090-7131)


Alignment Details
Target: chr1 (Bit Score: 52; Significance: 2e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 47107183 - 47107259
Alignment:
Q  7 atttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgta 87  Q
    |||||||||| |||||||||||| | ||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  47107183 atttggtacagatatgtggtgctcacgtcccttt----caatgcttgggcatcgcttaatggtttgttttgattgtttgta 47107259  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 41061648 - 41061722
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    ||||||||| ||| |||||||| |||||| ||||   ||||||||||||||||||||||||||||| ||| ||||||||    
T  41061648 tttggtacagataggtggtgctcaagtcc-tttc---caatgcttgggcatcgcttaatggtttgtattggttgtttgt 41061722  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 10722640 - 10722597
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  10722640 caatgcttgggcatcgcgtaatggtttgttttggttgtttgtat 10722597  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 17707604 - 17707556
Alignment:
Q  40 tctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    |||| ||||||||||||||| | ||||||||||||||| ||||||||||    
T  17707604 tcttacaatgcttgggcatcacgtaatggtttgttttggttgtttgtat 17707556  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 9903802 - 9903845
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||    
T  9903802 caatacttgggcatcgcgtaatggtttgttttggttgtttgtat 9903845  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 21335726 - 21335789
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttt 75  Q
    ||||| |||||||||||||| | ||||||     |||||||||||||||||| |||||||||||||||    
T  21335726 tttggcacatatatgtggtgttcaagtcc----gtttcaatgcttgggcatcacttaatggtttgttt 21335789  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 47586926 - 47586896
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttt 75  Q
    |||||||||||||||||||||||||||||||    
T  47586926 caatgcttgggcatcgcttaatggtttgttt 47586896  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 49968930 - 49968887
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||||| ||||||||| || || ||||||||||    
T  49968930 caatgcttgggcatcgcgtaatggtttcttatggttgtttgtat 49968887  T

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Target: chr8 (Bit Score: 45; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 45256332 - 45256407
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||| |||||||||||| ||||||     |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  45256332 tttggtacagatatgtggtgctcaagtcc-----tttcaatgtttgggcatcgcttaatggtttgttttggttgtttgtat 45256407  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 26031129 - 26031054
Alignment:
Q  7 atttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    |||||||||| ||| |||||||| |||||| ||||   ||||||||||| ||||||||||||||||| ||| ||||||||    
T  26031129 atttggtacagataggtggtgctcaagtcc-tttc---caatgcttgggtatcgcttaatggtttgtattggttgtttgt 26031054  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 8446707 - 8446750
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||    
T  8446707 caatgtttgggcatcacgtaatggtttgttttggttgtttgtat 8446750  T

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Target: chr7 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 18654336 - 18654413
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggttt-gttttgattgtttgtat 88  Q
    |||||||||||||||||||||| ||||||    ||||||||| || |||||||||||||||||| |||||| ||||||||||    
T  18654336 tttggtacatatatgtggtgctcaagtcc----ctttcaatgtttaggcatcgcttaatggtttggttttggttgtttgtat 18654413  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 23397236 - 23397270
Alignment:
Q  42 tttcaatgcttgggcatcgcttaatggtttgtttt 76  Q
    |||||||||||||||||||||||||||||||||||    
T  23397236 tttcaatgcttgggcatcgcttaatggtttgtttt 23397270  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 24753016 - 24752978
Alignment:
Q  50 cttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  24753016 cttgggcatcgcgtaatggtttgttttgattgtttgtat 24752978  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 7459211 - 7459251
Alignment:
Q  48 tgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  7459211 tgcttgggcattgcttaatggtttgttttggttgtttgtat 7459251  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 34231302 - 34231259
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  34231302 caatgcttgggcatcacataatggtttgttttggttgtttgtat 34231259  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 4076911 - 4076846
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttg 77  Q
    ||||||||| ||| |||||| | |||||||    |||||||| ||||||||| |||||||||||||||||    
T  4076911 tttggtacagataagtggtgttcaagtccc----tttcaatgtttgggcatcacttaatggtttgttttg 4076846  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 28060210 - 28060137
Alignment:
Q  12 gtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttt-tgattgtttgtat 88  Q
    ||||||||| |||||| | |||||||    ||||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  28060210 gtacatataggtggtgttcaagtccc----tttcaatgcttgggcatcgcttaatagttggtttctgattgcttgtat 28060137  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 53779681 - 53779605
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||| ||| |||||||||||||||| | |    ||||||||||||| |||||||||||||||||| ||||||||||    
T  53779681 tttggtacagataggtggtgctaaagtcccatcc----aatgcttgggcattgcttaatggtttgttttggttgtttgtat 53779605  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 29213484 - 29213560
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||| ||| |||||||| ||||||||| |    |||||||| |||| |||||||||||||||||| ||||||||||    
T  29213484 tttggtacagataggtggtgctcaagtcccttcc----aatgcttgagcattgcttaatggtttgttttggttgtttgtat 29213560  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 31863869 - 31863823
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtataac 91  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  31863869 caatgcttgggcatcgcgtaatggtttgttttggttggttgtataac 31863823  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 449654 - 449611
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  449654 caatgcttgggcatcacgtaatggtttgttttggttgtttgtat 449611  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 10563846 - 10563889
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||    
T  10563846 caatacttgggcattgcttaatggtttgttttggttgtttgtat 10563889  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 18107093 - 18107136
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  18107093 caatgcttgggcatcacgtaatggtttgttttggttgtttgtat 18107136  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 30274349 - 30274392
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  30274349 caatgcttgggcatcacgtaatggtttgttttggttgtttgtat 30274392  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 42823047 - 42823004
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||    
T  42823047 caatgcttgggcatcacgtaatggtttgttttgatggtttgtat 42823004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 34005497 - 34005451
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtataac 91  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||||||    
T  34005497 caatgcttgagcatcgcgtaatggtttgttttggttggttgtataac 34005451  T

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Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 12881222 - 12881265
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||||| ||||||||| || || ||||||||||    
T  12881222 caatgcttgggcatcgcgtaatggttttttatgtttgtttgtat 12881265  T

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Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 18935275 - 18935240
Alignment:
Q  41 ctttcaatgcttgggcatcgcttaatggtttgtttt 76  Q
    ||||||||| ||||||||| ||||||||||||||||    
T  18935275 ctttcaatgtttgggcatcacttaatggtttgtttt 18935240  T

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Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 34322856 - 34322895
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgttt 84  Q
    ||||||||||||||| | ||||||||||||||| ||||||    
T  34322856 caatgcttgggcatcacgtaatggtttgttttggttgttt 34322895  T

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Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 55854397 - 55854354
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||||    
T  55854397 caatgcttgagcatcacgtaatggtttgttttggttgtttgtat 55854354  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 25341838 - 25341914
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||| |||||||||||| ||||||||||    |||||||||| |||||||||||| ||||||||| || |||||||    
T  25341838 tttggtacagatatgtggtgctcaagtcccttt----caatgcttggacatcgcttaatgatttgttttggttatttgtat 25341914  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 8695428 - 8695474
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtataac 91  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  8695428 caatgcttgggcatcgcgtaatggtttgttttggttggttgtataac 8695474  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 9047315 - 9047361
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtataac 91  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  9047315 caatgcttgggcatcgcgtaatggtttgttttggttggttgtataac 9047361  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 26845507 - 26845433
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    ||||||||| ||| |||||||| |||||| ||||   |||||||||| |||||||||||||||||| ||| ||||||||    
T  26845507 tttggtacagataggtggtgctcaagtcc-tttc---caatgcttggacatcgcttaatggtttgtattggttgtttgt 26845433  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 11639569 - 11639526
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||    
T  11639569 caatgcttgggcatcgcgtaatggtttgttttggttggttgtat 11639526  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 19221730 - 19221687
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||| |||||||||||||||||||||||| || ||||||||||    
T  19221730 caatgtttgggcatcgcttaatggtttgttatggttgtttgtat 19221687  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 33121854 - 33121897
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  33121854 caatgcttgggcatcacgtaatggtttgttttggttgtttgtat 33121897  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 4922870 - 4922796
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    ||||||||| ||| |||||||| |||||| ||||   ||||||||||||||||||||||||||||| ||| ||||||||    
T  4922870 tttggtacagataggtggtgctcaagtcc-tttc---caatgcttgggcatcgcttaatggtttgtattggttgtttgt 4922796  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 20209223 - 20209297
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    ||||||||| ||| |||||||| |||||| ||||   ||||||||||||||||||||||||||||| ||| ||||||||    
T  20209223 tttggtacagataggtggtgctcaagtcc-tttc---caatgcttgggcatcgcttaatggtttgtattggttgtttgt 20209297  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 4416237 - 4416280
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  4416237 caatgcttgggcatcacgtaatggtttgttttggttgtttgtat 4416280  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 40089946 - 40089912
Alignment:
Q  41 ctttcaatgcttgggcatcgcttaatggtttgttt 75  Q
    |||||||||||||||||||||||||||| ||||||    
T  40089946 ctttcaatgcttgggcatcgcttaatggattgttt 40089912  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 9393145 - 9393097
Alignment:
Q  40 tctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  9393145 tctttcaatgtttgggcattgcttaatggtttgttttggttgtttgtat 9393097  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 24313960 - 24314001
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  24313960 caatgcttgggcatcgcttaatggtttgtattggttgtttgt 24314001  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 3000285 - 3000328
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  3000285 caatgcttgggcatcacgtaatggtttgttttggttgtttgtat 3000328  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 7075714 - 7075672
Alignment:
Q  46 aatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    |||||||||||||| | ||||||||||||||| ||||||||||    
T  7075714 aatgcttgggcatcacgtaatggtttgttttggttgtttgtat 7075672  T

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Target: chr6 (Bit Score: 36; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 17079728 - 17079771
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  17079728 caatgcttgggcatcgcgtaatggtttgttttggttgtttgtat 17079771  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 26526134 - 26526095
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgttt 84  Q
    |||||||||| |||||||||||||||||| ||| ||||||    
T  26526134 caatgcttggacatcgcttaatggtttgtattggttgttt 26526095  T

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Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 33722689 - 33722613
Alignment:
Q  8 tttggtacatatatgtggtgctaaagtccctttctttcaatgcttgggcatcgcttaatggtttgttttgattgtttgtat 88  Q
    ||||||||| ||| |||||||| |||||    |||||||||||||||||||  ||||| | ||||||||| | ||||||||    
T  33722689 tttggtacagataagtggtgctcaagtc----tctttcaatgcttgggcattacttaacgatttgttttggtagtttgtat 33722613  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 181732 - 181686
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgtataac 91  Q
    ||||| ||||||||||| ||||||||||||||| ||| |||||||||    
T  181732 caatgtttgggcatcgcgtaatggtttgttttggttggttgtataac 181686  T

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Target: scaffold0179 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 7131 - 7090
Alignment:
Q  45 caatgcttgggcatcgcttaatggtttgttttgattgtttgt 86  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||    
T  7131 caatgtttgggcatcgcttaatggtttgtattggttgtttgt 7090  T

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