View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5245-Insertion-2 (Length: 950)

Name: NF5245-Insertion-2
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5245-Insertion-2
NF5245-Insertion-2
[»] chr3 (9 HSPs)
chr3 (8-553)||(25154979-25155558)
chr3 (536-922)||(25155574-25155966)
chr3 (689-885)||(29787608-29787804)
chr3 (384-461)||(4806389-4806467)
chr3 (224-317)||(8364823-8364914)
chr3 (837-881)||(29634434-29634479)
chr3 (390-465)||(49436670-49436746)
chr3 (775-863)||(50341818-50341905)
chr3 (827-865)||(1638112-1638150)
[»] chr7 (10 HSPs)
chr7 (613-891)||(13303609-13303886)
chr7 (775-885)||(16650897-16651006)
chr7 (775-885)||(17625257-17625366)
chr7 (775-858)||(5281655-5281738)
chr7 (761-878)||(12680241-12680357)
chr7 (757-863)||(26926959-26927064)
chr7 (749-866)||(23554048-23554164)
chr7 (774-814)||(28009304-28009344)
chr7 (514-560)||(13303549-13303595)
chr7 (690-755)||(44109689-44109755)
[»] scaffold0086 (3 HSPs)
scaffold0086 (677-866)||(45763-45946)
scaffold0086 (514-584)||(52609-52680)
scaffold0086 (417-458)||(45370-45411)
[»] chr2 (2 HSPs)
chr2 (704-866)||(20529148-20529301)
chr2 (193-298)||(27488847-27488951)
[»] chr8 (9 HSPs)
chr8 (241-347)||(17816869-17816974)
chr8 (704-887)||(32108281-32108459)
chr8 (501-655)||(12784498-12784651)
chr8 (52-192)||(17715912-17716057)
chr8 (780-885)||(29370351-29370456)
chr8 (747-866)||(22842737-22842855)
chr8 (757-857)||(26140824-26140923)
chr8 (235-298)||(17943280-17943342)
chr8 (828-865)||(12785075-12785112)
[»] chr5 (10 HSPs)
chr5 (748-885)||(26604031-26604168)
chr5 (690-866)||(19575802-19575973)
chr5 (771-885)||(11477349-11477463)
chr5 (221-343)||(24189582-24189708)
chr5 (775-866)||(19748630-19748720)
chr5 (775-865)||(28718729-28718818)
chr5 (390-461)||(11476939-11477011)
chr5 (828-859)||(23228113-23228144)
chr5 (775-866)||(25360029-25360119)
chr5 (828-866)||(37397370-37397408)
[»] chr1 (6 HSPs)
chr1 (704-809)||(36321763-36321863)
chr1 (193-351)||(30984929-30985086)
chr1 (757-860)||(27800331-27800432)
chr1 (225-298)||(17774636-17774708)
chr1 (827-863)||(11788664-11788700)
chr1 (801-866)||(36321525-36321589)
[»] chr4 (13 HSPs)
chr4 (704-885)||(14089220-14089404)
chr4 (745-866)||(44101155-44101275)
chr4 (775-859)||(25145322-25145405)
chr4 (780-859)||(24075889-24075967)
chr4 (757-866)||(12226921-12227029)
chr4 (385-465)||(14088821-14088902)
chr4 (775-856)||(20758493-20758573)
chr4 (775-856)||(20764884-20764964)
chr4 (519-589)||(14088980-14089051)
chr4 (757-864)||(51104290-51104395)
chr4 (384-442)||(23486717-23486776)
chr4 (837-885)||(3510283-3510332)
chr4 (775-812)||(23124229-23124266)
[»] chr6 (8 HSPs)
chr6 (721-814)||(22961839-22961932)
chr6 (721-814)||(23826461-23826554)
chr6 (704-885)||(3386307-3386481)
chr6 (711-787)||(23607590-23607666)
chr6 (690-885)||(11117072-11117262)
chr6 (775-859)||(30764413-30764496)
chr6 (193-351)||(26272677-26272832)
chr6 (775-866)||(24560480-24560570)
[»] scaffold0402 (1 HSPs)
scaffold0402 (271-343)||(5734-5806)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Original strand, 25154979 - 25155558
Alignment:
Q  8 gattgttggtctatagggcaaacaagagtatccactannnnnnnatagcgttttaaaatattttacgagtttagtgaaaacgtgattagcaaatagtttg 107  Q
    |||||||||| |||| |||||||||||||||||  ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25154979 gattgttggtttatatggcaaacaagagtatccgttagggggg-atagcgttttaaaatattttacgagtttagtgaaaacgtgattagcaaatagtttg 25155077  T
Q  108 acttattggatttgagca---------taacaaaattataaaggcaatgataatacattaagatt---------tattattgattgaattgagagattca 189  Q
    ||||||||||||||| ||         |||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||    
T  25155078 acttattggatttgaacacgatatcgataacaaaattataaaggcaatgataatacattaatattaagatttactattattgattgaattgagagattca 25155177  T
Q  190 atgatcaaat----------------atcaatattccgcaatacaattcacaaaattagataaactcaaaccaaacttaattggaataaaaacaagctaa 273  Q
    ||| ||||||                ||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  25155178 atggtcaaatcttactgcaattaaatatcaatattccgcaatacagttcataaaattagacaaactcaaaccaaacctaattagaataaaaacaagctaa 25155277  T
Q  274 cactaaggaacacaaagtatatgaaccaatgagttcaaacttaactggatttcgattgtgataaaattgactttaaaattgactttgtggatggatgata 373  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25155278 cactaaggaacacaaagtatatgaactaatgagttcaaacttaactggatttcgattgtgataaaattgactttaaaattgactttgtggatggatgata 25155377  T
Q  374 attaataattgaaaactgctcttctcccaaacagttttgctca-tcccacctcaaactgcctaaaataaccccaatgtgagttaactcatgttttctatc 472  Q
    ||||  |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||     
T  25155378 attagcaattgaaagctgctcttctcccaaacagttttgctcattcccacctcaaactgcctaaaataaccccaatgtgaattaacttgtgttttctatt 25155477  T
Q  473 tccaatgtgacttaactcaagttggaccaacgtgaattaaattgtgttggatttaggtaaactaacagaccatcaattttt 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25155478 tccaatgtgacttaactcaagttggaccaacgtgaattaaattgtgttggatttaggtaaactaacagaccatcaattttt 25155558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 536 - 922
Target Start/End: Original strand, 25155574 - 25155966
Alignment:
Q  536 aacagaccatcaatttttgacagagatgatgttttttaagcccctaaacatacactatgttttgttaannnnnnnnaaaagcatgtcttagcttagaaag 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||    
T  25155574 aacagaccatcaatttttgacagagatgatgttttttaagcccctaaacatacattatgttttgttaattttttttaaaagcatgtcttagcttagaaag 25155673  T
Q  636 atcatttcattcactaatacgctaatgcgtagtatctaaacatagaatacgaaaaaatttatttagtct-aatttaatctccgtttaaatcgggcaataa 734  Q
    || ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  25155674 ataatttcattcactaatacactaatgcgcagtatctaaacatagaatatgaaaaaatttatttagttttaatttaatctccgtttaaatcgggcaataa 25155773  T
Q  735 acgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatct 834  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25155774 acgaaacattgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatgt 25155873  T
Q  835 tggcattgaagtgtcttatacttagtgt-aaaatttggtagtctctttg-aaactc-aaataatg-agag-atgcatcacatgtttctaccaa 922  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||||||||||||    
T  25155874 tggcattgaagtgtcttatacttagtgtaaaaatttggtaatctctttgaaaactcaaaataatgaagagaatgcatcacatgtttctaccaa 25155966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 689 - 885
Target Start/End: Original strand, 29787608 - 29787804
Alignment:
Q  689 aaaatttatttagtct-aatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatc 787  Q
    |||||||||||||| | ||||| | || |||||||| |||| ||||||| ||  ||||| || ||||| ||||||||||| | || ||||||| ||||||    
T  29787608 aaaatttatttagttttaatttcaacttcgtttaaagcgggaaataaacaaagtgttgt-ttgcattacattacattctccctaaagatgttggatcatc 29787706  T
Q  788 gtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggtagtctctttgaaa 885  Q
     | ||||| | ||||||||| ||||||  ||| || |  |||| | ||||||||||||||||||||| ||||||| |||||||| |||||| |||||||    
T  29787707 atcatgttgggtttaaattatattcatggaagtttacggaaaa-tgttggcattgaagtgtcttatatttagtgtaaaaatttgttagtctttttgaaa 29787804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 4806467 - 4806389
Alignment:
Q  384 gaaaactgctcttctcccaaacagttttgctcat-cccacctcaaactgcctaaaataaccccaatgtgagttaactca 461  Q
    |||||| | |||||||||||||| |||||| ||| ||||||||||| | ||||||||||||||||  ||||||||||||    
T  4806467 gaaaaccgttcttctcccaaacatttttgcacattcccacctcaaaattcctaaaataaccccaacatgagttaactca 4806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 8364914 - 8364823
Alignment:
Q  224 caaaattagataaactcaaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagtatatgaaccaatgagttcaaacttaa 317  Q
    ||||| |||| ||||||||||||||| |||||| |||  |||||| |||||| |||| |||||||| ||||||||  ||||| || ||||||||    
T  8364914 caaaactagacaaactcaaaccaaacctaattgcaat--aaacaaactaacattaagaaacacaaaatatatgaattaatgatttgaaacttaa 8364823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 837 - 881
Target Start/End: Original strand, 29634434 - 29634479
Alignment:
Q  837 gcattgaagtgtcttatacttagtgt-aaaatttggtagtctcttt 881  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||    
T  29634434 gcattgaaatgtcttatacttagtgtaaaaatttggtagtctcttt 29634479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 390 - 465
Target Start/End: Complemental strand, 49436746 - 49436670
Alignment:
Q  390 tgctcttctcccaaacagttttgctcat-cccacctcaaactgcctaaaataaccccaatgtgagttaactcatgtt 465  Q
    |||||||||||||||||  |||| |||| ||||||||||| | | |||| ||||| ||| |||||||||||||||||    
T  49436746 tgctcttctcccaaacaaatttggtcattcccacctcaaatttcttaaagtaacctcaacgtgagttaactcatgtt 49436670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 863
Target Start/End: Original strand, 50341818 - 50341905
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgta 863  Q
    |||| |||||||| |||||||  ||||||||| ||||||| |||| ||| | |||| | | || |||||||||||||||||||||||||    
T  50341818 atgtggtatcatcatgatgttgaatttaaatttaattcatgaaagtttgtcgaaaa-tgtcggaattgaagtgtcttatacttagtgta 50341905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 827 - 865
Target Start/End: Original strand, 1638112 - 1638150
Alignment:
Q  827 aaaaatcttggcattgaagtgtcttatacttagtgtaaa 865  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1638112 aaaaatcttggcatttaactgtcttatacttagtgtaaa 1638150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 891
Target Start/End: Original strand, 13303609 - 13303886
Alignment:
Q  613 aaagcatgtcttagcttagaaagatcatttcattcactaatacgcta-atgcgtagtatctaaacatagaatacgaaaaaatttatttagtct-aattta 710  Q
    |||||||||||||||||| ||||| |||||||||||||||| ||||| |  || |  ||||||||| ||| ||||| ||| |||||||||| | |||||     
T  13303609 aaagcatgtcttagcttaaaaagaacatttcattcactaatgcgctatacacgaa--atctaaacaaagagtacgataaa-tttatttagttttaatttc 13303705  T
Q  711 atctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaat 810  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| || | ||  |||| ||||| || ||||||| ||||||||||| ||    
T  13303706 atcttcgttcaaatcgggcaataaacgaaacgttgtgttacattaaattacattttccctaaatatgtggtatcttcatgatgtttgatttaaattatat 13303805  T
Q  811 tcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggtagtctctttgaaactcaaa 891  Q
    || | |||| || ||  ||||| |  |||||||||||| |||||||||| || |||||||| |||||||||| ||| |||||    
T  13303806 tcttgaaagttttcc-gaaaatgtcagcattgaagtgtattatacttagcgtaaaaatttgatagtctctttaaaaatcaaa 13303886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 775 - 885
Target Start/End: Original strand, 16650897 - 16651006
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggta 873  Q
    |||| |||||||| ||||||| |||||||||||| ||||| |||| |||  ||||||| |||||||||||||||||||||| |||||| ||||||||  |    
T  16650897 atgtggtatcatcatgatgttggatttaaattaa-ttcattaaagtttgt-aaaaaatgttggcattgaagtgtcttatacatagtgtaaaaatttgcaa 16650994  T
Q  874 gtctctttgaaa 885  Q
    ||||||||||||    
T  16650995 gtctctttgaaa 16651006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 775 - 885
Target Start/End: Original strand, 17625257 - 17625366
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggta 873  Q
    |||| |||||||| ||||||| |||||||||||| ||||| |||| |||  ||||||| |||||||||||||||||||||| |||||| ||||||||  |    
T  17625257 atgtggtatcatcatgatgttggatttaaattaa-ttcattaaagtttgt-aaaaaatgttggcattgaagtgtcttatacatagtgtaaaaatttgcaa 17625354  T
Q  874 gtctctttgaaa 885  Q
    ||||||||||||    
T  17625355 gtctctttgaaa 17625366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 775 - 858
Target Start/End: Original strand, 5281655 - 5281738
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatactta 858  Q
    |||| |||||||| | ||||| |||||||||| ||||| |||||| ||  |||||||| || ||||||||||||||||||||||    
T  5281655 atgtggtatcatcataatgttggatttaaatttaattcttaaaagttttgcaaaaaatgtttgcattgaagtgtcttatactta 5281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 761 - 878
Target Start/End: Complemental strand, 12680357 - 12680241
Alignment:
Q  761 cattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagt 860  Q
    ||||||| | ||||||||||||||||  | || || | ||||||||||||||||  ||| ||||| |||| | |||  || |||||||||||||||||||    
T  12680357 cattctccctaaggatgttgtatcataatcatcttgggtttaaattaaattcatggaagtttgccgaaaa-tattgaaatggaagtgtcttatacttagt 12680259  T
Q  861 gtaaaatttggtagtctc 878  Q
     ||||||||| |||||||    
T  12680258 ataaaatttgctagtctc 12680241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 757 - 863
Target Start/End: Complemental strand, 26927064 - 26926959
Alignment:
Q  757 attacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    ||||||||||| | ||  | |||||||||| |||||||| |||||||||||||||  | |||| ||||  |||||  ||| ||| |||||||||||||||    
T  26927064 attacattctccctaaataagttgtatcattgtgatgttggatttaaattaaattgttgaaagtttgcggaaaaa-gttgacatcgaagtgtcttatact 26926966  T
Q  857 tagtgta 863  Q
    |||||||    
T  26926965 tagtgta 26926959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 866
Target Start/End: Complemental strand, 23554164 - 23554048
Alignment:
Q  749 tacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgt 848  Q
    ||||||| ||||||| ||| || |  |||| |||||||| ||||||| | |||||||||||||  |||||| ||||  |||| | |||| | | ||||||    
T  23554164 tacattacattacatgctcccccaatatgtggtatcatcatgatgtttggtttaaattaaattgttaaaagtttgctcaaaa-tattggtaataaagtgt 23554066  T
Q  849 cttatacttagtgtaaaa 866  Q
    ||||||||||||||||||    
T  23554065 cttatacttagtgtaaaa 23554048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 774 - 814
Target Start/End: Complemental strand, 28009344 - 28009304
Alignment:
Q  774 gatgttgtatcatcgtgatgttagatttaaattaaattcat 814  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  28009344 gatgttgtatcatcatgatgttggatttaaattaaattcat 28009304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 514 - 560
Target Start/End: Original strand, 13303549 - 13303595
Alignment:
Q  514 ttgtgttggatttaggtaaactaacagaccatcaatttttgacagag 560  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  13303549 ttgtgttgattttaggtaaactaacaaaccattaatttttgacagag 13303595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 755
Target Start/End: Original strand, 44109689 - 44109755
Alignment:
Q  690 aaatttatttagtct-aatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacatta 755  Q
    ||||||||||||| | ||||| |||||| || ||| ||||||||||||||| ||||| |||||||||    
T  44109689 aaatttatttagttttaatttcatctccattcaaaccgggcaataaacgaagcgttgcgttacatta 44109755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 677 - 866
Target Start/End: Original strand, 45763 - 45946
Alignment:
Q  677 atagaatacgaaaaaatttatttagtct-aatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaagga 775  Q
    ||||||||||| ||| |||||||||| | ||||| ||||||||| ||||||||||||||| ||| | ||     |||||| |||||||||||   || ||    
T  45763 atagaatacgacaaa-tttatttagttttaatttgatctccgttcaaatcgggcaataaatgaagcatt-----acattacattacattctcaataaaga 45856  T
Q  776 tgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    |||||||||||| || |||| ||||||||||| |||||  |||| ||| |||||| | |||||||||||||||||||||||||||||||||    
T  45857 tgttgtatcatcatgttgttggatttaaattatattcaagaaagtttgtcaaaaa-tgttggcattgaagtgtcttatacttagtgtaaaa 45946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 584
Target Start/End: Original strand, 52609 - 52680
Alignment:
Q  514 ttgtgttggatttaggtaaactaacagaccatcaatttttgacagagatgat-gttttttaagcccctaaac 584  Q
    ||||||||| ||||||||| |||||| | || ||||| |||||||||||| |  ||||||||||||||||||    
T  52609 ttgtgttggttttaggtaagctaacaaagcaacaattcttgacagagatgctatttttttaagcccctaaac 52680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 45370 - 45411
Alignment:
Q  417 tcccacctcaaactgcctaaaataaccccaatgtgagttaac 458  Q
    |||||||||||||| |||||||||| ||||||| ||||||||    
T  45370 tcccacctcaaacttcctaaaataatcccaatgcgagttaac 45411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 704 - 866
Target Start/End: Original strand, 20529148 - 20529301
Alignment:
Q  704 taatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaa 803  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||     ||||||| | |||||||| || ||||| ||||||| |||||||    
T  20529148 taatttcatctccgtttaa-tcgggcaataaacgaagcgttgtgttacatta-----cattctc-ctaaggatgtggt-tcatcatgatgttggatttaa 20529239  T
Q  804 attaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    ||||||||||| |||| |||    ||||| |||||||||||||||||||||||||||||||||    
T  20529240 attaaattcatgaaagtttg-ttgaaaatgttggcattgaagtgtcttatacttagtgtaaaa 20529301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 27488951 - 27488847
Alignment:
Q  193 atcaaatatcaatattccgcaatacaattcacaaaattagataaactcaaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagta 292  Q
    |||||||||| ||||||  ||| || ||| ||||||||||| |  |||||  ||||| |||||| ||||||| ||| |||||||||||||||| ||||||    
T  27488951 atcaaatatcgatattcaacaacacgatttacaaaattagacaggctcaattcaaacctaattgcaataaaa-caaactaacactaaggaacaaaaagta 27488853  T
Q  293 tatgaa 298  Q
    ||||||    
T  27488852 tatgaa 27488847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 17816974 - 17816869
Alignment:
Q  241 aaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagtatatgaaccaatgagttcaaacttaactggatttcgattgtgataaaat 340  Q
    ||||||||| |||||| | ||||| |||||||||| ||||||||||||||||||||||  ||||| || |||||||| || |||||||||||||||||||    
T  17816974 aaaccaaacctaattgcactaaaa-caagctaacattaaggaacacaaagtatatgaattaatgaattgaaacttaattgaatttcgattgtgataaaat 17816876  T
Q  341 tgacttt 347  Q
    |||||||    
T  17816875 tgacttt 17816869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 704 - 887
Target Start/End: Original strand, 32108281 - 32108459
Alignment:
Q  704 taatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaa 803  Q
    |||||| ||||||||| |||||| ||||||||| || | |||||||||||||     |||||||   ||||||||||||||||| ||||||| |||| ||    
T  32108281 taatttcatctccgttcaaatcgtgcaataaacaaagccttgtgttacatta-----cattctccgtaaggatgttgtatcatcatgatgttggattaaa 32108375  T
Q  804 attaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggtagtctctttgaaact 887  Q
    |||||||||||    | ||| |  ||||| |||||||| |||||| ||||||||||||| ||||||||  |||||||||||||||    
T  32108376 attaaattcatggttgtttg-ctcaaaatgttggcattaaagtgttttatacttagtgtaaaaatttgcaagtctctttgaaact 32108459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 501 - 655
Target Start/End: Original strand, 12784498 - 12784651
Alignment:
Q  501 aacgtgaattaaattgtgttggatttaggtaaactaacagaccatcaatttttgacagagatgatg-ttttttaagcccctaaacatacactatgttttg 599  Q
    ||||||| |||| ||||||||  |||||||||||||||| ||||||||||||||||| | ||  || |||||||||| | ||||| |||| |||||| ||    
T  12784498 aacgtgagttaacttgtgttgattttaggtaaactaacaaaccatcaatttttgacatacatattgtttttttaagctcttaaacgtacaatatgttatg 12784597  T
Q  600 ttaannnnnnnnaaaagcatgtcttagcttagaaagatcatttcattcactaatac 655  Q
    || |        ||||||||||||||||||||||||| |||||||||| |||||||    
T  12784598 ttca--ttttttaaaagcatgtcttagcttagaaagaacatttcattcgctaatac 12784651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 17716057 - 17715912
Alignment:
Q  52 atagcgttttaaaatattttacgagtttagtgaaaacgtgattagcaaatagtttgacttattggatttgagc---------ataacaaaattataaagg 142  Q
    |||| |||||||||||||||| |||||||| |||| ||||||| | |||  ||||||||||||||||||| ||         ||||||||| ||||||      
T  17716057 atagtgttttaaaatattttaggagtttagcgaaagcgtgattggaaaacggtttgacttattggatttgtgcatgatagatataacaaaaatataaaaa 17715958  T
Q  143 caatgataatacattaagatttattattgattgaattgagagattcaatg 192  Q
    ||||||||||||| |||||||||||    |||||||||||||||||||||    
T  17715957 caatgataatacactaagatttatt----attgaattgagagattcaatg 17715912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 780 - 885
Target Start/End: Original strand, 29370351 - 29370456
Alignment:
Q  780 gtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggtagtctc 878  Q
    |||||||| ||||||| ||| |||||||||||| | |||| ||| | |||| | | | |||||||||||||||||| |||||| ||||||||||||||||    
T  29370351 gtatcatcatgatgttggatataaattaaattcttgaaagtttgtcgaaaa-tatcgacattgaagtgtcttatacatagtgtaaaaatttggtagtctc 29370449  T
Q  879 tttgaaa 885  Q
    |||||||    
T  29370450 tttgaaa 29370456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 747 - 866
Target Start/End: Original strand, 22842737 - 22842855
Alignment:
Q  747 gttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagt 846  Q
    ||||||||| ||||||||||| | ||  |||| |||||||| ||||||| | || ||||||||||| | |||  ||||| |||| | |||||||||||||    
T  22842737 gttacattacattacattctccctaaatatgtggtatcatcatgatgttgggttcaaattaaattcttgaaattttgccgaaaa-tgttggcattgaagt 22842835  T
Q  847 gtcttatacttagtgtaaaa 866  Q
     ||||||||||||| |||||    
T  22842836 atcttatacttagtataaaa 22842855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 757 - 857
Target Start/End: Complemental strand, 26140923 - 26140824
Alignment:
Q  757 attacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    ||||||||||| | ||  |||| |||||||| ||||||| | ||||||||| |||| | |||| ||||| |||| | | |||||||||||||||||||||    
T  26140923 attacattctccctaaatatgtggtatcatcatgatgttgggtttaaattatattcttgaaagtttgccgaaaa-tataggcattgaagtgtcttatact 26140825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 17943342 - 17943280
Alignment:
Q  235 aaactcaaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagtatatgaa 298  Q
    ||||||||||||||  |||||| ||||||| ||| |||||| ||||||||| ||||||||||||    
T  17943342 aaactcaaaccaaatctaattgcaataaaa-caaactaacaataaggaacataaagtatatgaa 17943280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 828 - 865
Target Start/End: Complemental strand, 12785112 - 12785075
Alignment:
Q  828 aaaatcttggcattgaagtgtcttatacttagtgtaaa 865  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  12785112 aaaatgttggcattgaagtgtgttatacttagtgtaaa 12785075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 748 - 885
Target Start/End: Original strand, 26604031 - 26604168
Alignment:
Q  748 ttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtg 847  Q
    |||||||| |||||||||||   |||||||| |||||| | ||||||  |||||||||||||||||| |||| || ||  ||||| ||||||||||||||    
T  26604031 ttacattacattacattctccttaaggatgtggtatcaacatgatgtaggatttaaattaaattcatgaaagtttacc-gaaaatgttggcattgaagtg 26604129  T
Q  848 tcttatacttagtgt-aaaatttggtagtctctttgaaa 885  Q
    ||||||||||| ||| ||||||||  |||||||||||||    
T  26604130 tcttatacttaatgtaaaaatttgcaagtctctttgaaa 26604168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 690 - 866
Target Start/End: Complemental strand, 19575973 - 19575802
Alignment:
Q  690 aaatttatttagtct-aatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcg 788  Q
    ||||||||||||| | ||||  |||| |||| |||||||||||||||||||  |||| |||||||||     |||||||   ||||||||  |||||||     
T  19575973 aaatttatttagttttaattcgatcttcgttcaaatcgggcaataaacgaagtgttgcgttacatta-----cattctccataaggatgtgatatcatca 19575879  T
Q  789 tgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    ||||||| |||||||||||||||||| |||| ||| |  ||||| ||||||||||| | |||||||||| ||||||||    
T  19575878 tgatgttggatttaaattaaattcatgaaagtttgtc-gaaaatgttggcattgaaatatcttatacttggtgtaaaa 19575802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 771 - 885
Target Start/End: Original strand, 11477349 - 11477463
Alignment:
Q  771 aaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaattt 869  Q
    |||||||||| |||| | | ||||||| ||||| ||||||||||  ||| ||||| |||| | ||||||||||||||| ||||||||||||| |||||||    
T  11477349 aaggatgttgaatcaccatcatgttaggtttaagttaaattcatggaagtttgccgaaaa-tgttggcattgaagtgtgttatacttagtgtaaaaattt 11477447  T
Q  870 ggtagtctctttgaaa 885  Q
    |  |||||||||||||    
T  11477448 gccagtctctttgaaa 11477463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 343
Target Start/End: Complemental strand, 24189708 - 24189582
Alignment:
Q  221 tcacaaaattagataaactcaaaccaaacttaattggaata----aaaacaagctaacactaaggaacacaaagtatatgaaccaatgagttcaaactta 316  Q
    |||||||| |||| ||||||||||||||| |||||| ||||    ||| ||  ||||||||||||||||||||||||||||   || || || |||||||    
T  24189708 tcacaaaactagacaaactcaaaccaaacctaattgcaatataataaaccacactaacactaaggaacacaaagtatatgagttaaggatttgaaactta 24189609  T
Q  317 actggatttcgattgtgataaaattga 343  Q
    | || | ||  ||||||||||||||||    
T  24189608 attgaagtttaattgtgataaaattga 24189582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 775 - 866
Target Start/End: Complemental strand, 19748720 - 19748630
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    |||| |||||||| |||| || |||||||||| ||||| | |||| || || |||| | |||||||||||||||| ||||||||||||||||    
T  19748720 atgtggtatcatcatgattttggatttaaatttaattcttgaaagttttccgaaaa-tgttggcattgaagtgtcgtatacttagtgtaaaa 19748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 775 - 865
Target Start/End: Complemental strand, 28718818 - 28718729
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaa 865  Q
    |||| |||||||| ||||| |||||||||||| ||||  |  ||| |||| |||||   ||||||||||||||||||||||||||||||||    
T  28718818 atgtggtatcatcatgatgctagatttaaatttaattgttggaagtttgcgaaaaaga-ttggcattgaagtgtcttatacttagtgtaaa 28718729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 11476939 - 11477011
Alignment:
Q  390 tgctcttctcccaaacagttttgctcat-cccacctcaaactgcctaaaataaccccaatgtgagttaactca 461  Q
    |||||||||| |||| |||||||||||| ||||| ||||| | |||||||||||| || ||||||||| ||||    
T  11476939 tgctcttctctcaaatagttttgctcattcccacttcaaatttcctaaaataacctcagtgtgagttatctca 11477011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 828 - 859
Target Start/End: Original strand, 23228113 - 23228144
Alignment:
Q  828 aaaatcttggcattgaagtgtcttatacttag 859  Q
    ||||||||||||||||||||||||||||||||    
T  23228113 aaaatcttggcattgaagtgtcttatacttag 23228144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 866
Target Start/End: Original strand, 25360029 - 25360119
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    |||| |||||||| |||  || |||||||||| ||||| | |||| ||||| |||| | |||||||||||||||| |||| |||||||||||    
T  25360029 atgtggtatcatcatgaaattggatttaaatttaattcttgaaagtttgccgaaaa-tgttggcattgaagtgtcgtatatttagtgtaaaa 25360119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 828 - 866
Target Start/End: Complemental strand, 37397408 - 37397370
Alignment:
Q  828 aaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  37397408 aaaatgttggcattgaagtgtcttatacttagtttaaaa 37397370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 704 - 809
Target Start/End: Complemental strand, 36321863 - 36321763
Alignment:
Q  704 taatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaa 803  Q
    |||||| |||| |||||||||||| |||||||||||  ||||||||||||||     ||||||||||||||||||  ||||||||||||||| |||||||    
T  36321863 taatttcatctacgtttaaatcggacaataaacgaagtgttgtgttacatta-----cattctctccaaggatgtgatatcatcgtgatgttggatttaa 36321769  T
Q  804 attaaa 809  Q
    ||||||    
T  36321768 attaaa 36321763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 30984929 - 30985086
Alignment:
Q  193 atcaaatatcaatattccgcaatacaattcacaaaattagataaactcaaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagta 292  Q
    |||||||||||||| |||   |||||| ||||||||||||| ||||||||||||||| |||||| ||| ||| ||  ||| |||||| | ||| ||| ||    
T  30984929 atcaaatatcaataatccaatatacaaatcacaaaattagacaaactcaaaccaaacctaattgcaat-aaaccacactagcactaaagcacaaaaaata 30985027  T
Q  293 tatgaaccaatgagttcaaacttaactggatttcgattgtgataaaattgactttaaaa 351  Q
    ||||||  ||||| || |||||||| || | ||  |||||||||||||||| |||||||    
T  30985028 tatgaattaatgatttgaaacttaattgaagtttaattgtgataaaattgaatttaaaa 30985086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 757 - 860
Target Start/End: Complemental strand, 27800432 - 27800331
Alignment:
Q  757 attacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||| | |||| ||||    |||| | |||||||||||||||||||||    
T  27800432 attacattctctttaaatatgtggtatcatcgtgatgttggatttaaattaaattcttgaaagtttgc--ggaaatgtcggcattgaagtgtcttatact 27800335  T
Q  857 tagt 860  Q
    ||||    
T  27800334 tagt 27800331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 17774708 - 17774636
Alignment:
Q  225 aaaattagataaactcaaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagtatatgaa 298  Q
    ||||||||| || | |||||||||| |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  17774708 aaaattagacaagcacaaaccaaacataattggaataaaa-caaactaactccaaggaacacaaagtatatgaa 17774636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 827 - 863
Target Start/End: Original strand, 11788664 - 11788700
Alignment:
Q  827 aaaaatcttggcattgaagtgtcttatacttagtgta 863  Q
    |||||||||||||||||||||||||||||||||||||    
T  11788664 aaaaatcttggcattgaagtgtcttatacttagtgta 11788700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 866
Target Start/End: Complemental strand, 36321589 - 36321525
Alignment:
Q  801 taaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    |||||||||||||| |||| ||||| |||| | |||||||| |||| ||||||| |||||||||||    
T  36321589 taaattaaattcatgaaagtttgccgaaaa-tgttggcattcaagtatcttatatttagtgtaaaa 36321525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 704 - 885
Target Start/End: Original strand, 14089220 - 14089404
Alignment:
Q  704 taatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttg---tatcatcgtgatgttagatt 800  Q
    |||||| || |||||| ||||  |||||||||| |||| ||||||||||||| |||||||| ||   ||||||| ||    |||||| | ||||| ||||    
T  14089220 taatttcatatccgttcaaattaggcaataaacaaaacattgtgttacattacattacattatccttaaggatgctgaatcatcatcatcatgttggatt 14089319  T
Q  801 taaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggtagtctctttgaaa 885  Q
     |||||||||||||  ||| |||||  ||||| ||||||||||  ||||||||||||||||| |||||||| ||||||||||||||    
T  14089320 gaaattaaattcatggaagtttgcc-gaaaatgttggcattgacatgtcttatacttagtgtaaaaatttgctagtctctttgaaa 14089404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 745 - 866
Target Start/End: Complemental strand, 44101275 - 44101155
Alignment:
Q  745 gtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaa 844  Q
    ||||||| ||| ||||||||||| | ||  |||| |||||||| ||||||| |||||||||||||||| | |||| ||| |  || || | | |||||||    
T  44101275 gtgttacgttacattacattctcccgaaatatgtggtatcatcatgatgttggatttaaattaaattcttgaaagtttg-cggaatatgtcgacattgaa 44101177  T
Q  845 gtgtcttatacttagtgtaaaa 866  Q
    ||||||||||||||||||||||    
T  44101176 gtgtcttatacttagtgtaaaa 44101155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 775 - 859
Target Start/End: Complemental strand, 25145405 - 25145322
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttag 859  Q
    ||||||||||||| ||||||| |||||||||| || || | |||| ||||| |||| | ||||||||||||||||||||||||||    
T  25145405 atgttgtatcatcatgatgttggatttaaatttaactcttgaaagtttgcc-aaaattgttggcattgaagtgtcttatacttag 25145322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 780 - 859
Target Start/End: Complemental strand, 24075967 - 24075889
Alignment:
Q  780 gtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttag 859  Q
    |||||||| ||||||| |||||||||| ||||| | |||| || ||||||| | ||||||||||||||||||||||||||    
T  24075967 gtatcatcatgatgttggatttaaatttaattcttgaaagttttccaaaaa-tgttggcattgaagtgtcttatacttag 24075889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 757 - 866
Target Start/End: Original strand, 12226921 - 12227029
Alignment:
Q  757 attacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    |||||||| || | |||||||||| |||||| |||| ||  ||| ||||| ||||||| |||| || ||||||| | ||||  |||||||||||||||||    
T  12226921 attacattgtccctaaggatgttgcatcatcatgattttgaattaaaatttaattcatgaaagttttccaaaaa-tgttggagttgaagtgtcttatact 12227019  T
Q  857 tagtgtaaaa 866  Q
    ||||||||||    
T  12227020 tagtgtaaaa 12227029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 14088821 - 14088902
Alignment:
Q  385 aaaactgctcttctcccaaacagttttgctcatc-ccacctcaaactgcctaaaataaccccaatgtgagttaactcatgtt 465  Q
    |||| ||||||||||||| ||| ||||||||||  |||||||||||| |||||||||||| | |  ||||||||||||||||    
T  14088821 aaaattgctcttctcccagacaattttgctcatttccacctcaaacttcctaaaataacctcgacttgagttaactcatgtt 14088902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 775 - 856
Target Start/End: Original strand, 20758493 - 20758573
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    |||| |||||||| ||||||| |||||||||||||||| | |||| ||||| |||||  ||||||||||| |||||||||||    
T  20758493 atgtggtatcatcatgatgttggatttaaattaaattcttgaaagtttgcc-aaaaacgttggcattgaattgtcttatact 20758573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 775 - 856
Target Start/End: Original strand, 20764884 - 20764964
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    |||| |||||||| ||||||| |||||||||||||||| | |||| ||||| |||||  ||||||||||| |||||||||||    
T  20764884 atgtggtatcatcatgatgttggatttaaattaaattcttgaaagtttgcc-aaaaacgttggcattgaattgtcttatact 20764964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 519 - 589
Target Start/End: Original strand, 14088980 - 14089051
Alignment:
Q  519 ttggatttaggtaaactaacagaccatcaatttttgacagagatgatgtttt-ttaagcccctaaacataca 589  Q
    |||| ||||| |||||||||| |||||||||| |||| ||||||| |||||| |||||||||||||| ||||    
T  14088980 ttggttttagttaaactaacaaaccatcaattcttgatagagatgctgtttttttaagcccctaaacttaca 14089051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 757 - 864
Target Start/End: Complemental strand, 51104395 - 51104290
Alignment:
Q  757 attacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatact 856  Q
    ||||||||||||| |||||||| | |||||| |||| || ||||||||||||| ||||  ||| ||  | |||||| ||||||||||||||| |||||||    
T  51104395 attacattctctctaaggatgtagcatcatcatgatatttgatttaaattaaactcatggaag-tttactaaaaatgttggcattgaagtgt-ttatact 51104298  T
Q  857 tagtgtaa 864  Q
    || |||||    
T  51104297 taatgtaa 51104290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 23486776 - 23486717
Alignment:
Q  384 gaaaactgctcttctcccaaacagttttgctca-tcccacctcaaactgcctaaaataac 442  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||   ||||||||||    
T  23486776 gaaatctgctcttctcccaaacagttttgctcatttccacctcaaacattctaaaataac 23486717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 837 - 885
Target Start/End: Complemental strand, 3510332 - 3510283
Alignment:
Q  837 gcattgaagtgtcttatacttagtgtaaa-atttggtagtctctttgaaa 885  Q
    |||||||||||||||||||||||||||||  |||| | ||||||||||||    
T  3510332 gcattgaagtgtcttatacttagtgtaaatgtttgtttgtctctttgaaa 3510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 775 - 812
Target Start/End: Original strand, 23124229 - 23124266
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattc 812  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  23124229 atgtggtatcatcgtgatgttggatttaaattaaattc 23124266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 721 - 814
Target Start/End: Original strand, 22961839 - 22961932
Alignment:
Q  721 aaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcat 814  Q
    ||||||| |||||||||||  ||||  |||||||| ||||||||||| | |||||||| |||||||| ||||||| |||| |||||||||||||    
T  22961839 aaatcggacaataaacgaagtgttgcattacattacattacattctccctaaggatgtcgtatcatcatgatgttggattaaaattaaattcat 22961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 721 - 814
Target Start/End: Complemental strand, 23826554 - 23826461
Alignment:
Q  721 aaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaaattaaattcat 814  Q
    ||||||| |||||||||||  ||||  |||||||| ||||||||||| | |||||||| |||||||| ||||||| |||| |||||||||||||    
T  23826554 aaatcggacaataaacgaagtgttgcattacattacattacattctccctaaggatgtcgtatcatcatgatgttggattaaaattaaattcat 23826461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 704 - 885
Target Start/End: Complemental strand, 3386481 - 3386307
Alignment:
Q  704 taatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcgtgatgttagatttaa 803  Q
    |||||| ||||||||| |||||||| ||||||||||     || || ||||| |||||| || ||  |||||||| |||||||| |||| || |||||||    
T  3386481 taatttcatctccgttcaaatcgggtaataaacgaa-----gtcttgcattacattacactccct--aaggatgtggtatcatcatgatattggatttaa 3386389  T
Q  804 attaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgt-aaaatttggtagtctctttgaaa 885  Q
     |||||||||| |||| ||  | |||| | ||| ||||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  3386388 tttaaattcatgaaagtttatcgaaaa-tattgtcattgaagtgtcttatatttagtgtaaaaatttgcaagtctctttgaaa 3386307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 711 - 787
Target Start/End: Original strand, 23607590 - 23607666
Alignment:
Q  711 atctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatc 787  Q
    |||| |||| |||||||||||||||| || ||||||||||||||| ||||  || |||| |||||||||||||||||    
T  23607590 atcttcgttcaaatcgggcaataaacaaagcgttgtgttacattacattatgttttctctaaggatgttgtatcatc 23607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 690 - 885
Target Start/End: Original strand, 11117072 - 11117262
Alignment:
Q  690 aaatttatttagtct-aatttaatctccgtttaaatcgggcaataaacgaaacgttgtgttacattaaattacattctctccaaggatgttgtatcatcg 788  Q
    ||||||||||||| | ||||| |||||| || |||| ||||||||||||||  ||||||||||||||     | ||||  | |||||||||||||||||     
T  11117072 aaatttatttagttttaatttcatctccattcaaattgggcaataaacgaagtgttgtgttacatta-----cgttcttcctaaggatgttgtatcatca 11117166  T
Q  789 tgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaatttggtagtctctttgaaa 885  Q
    |||||||  ||| |||||||| ||||    | || |  |||  | |||||||| |||| |||||||||||||||||||||||  ||||||| |||||    
T  11117167 tgatgttgaattaaaattaaagtcatggttgttttctcaaag-tgttggcattaaagtatcttatacttagtgtaaaatttgcaagtctctatgaaa 11117262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 775 - 859
Target Start/End: Original strand, 30764413 - 30764496
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttag 859  Q
    |||| |||||||| | ||||| |||||||||| ||||| | |||| |||||||||| | ||||||||||||||||||| ||||||    
T  30764413 atgtggtatcatcataatgttggatttaaatttaattcttgaaagtttgccaaaaa-tgttggcattgaagtgtcttacacttag 30764496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 26272677 - 26272832
Alignment:
Q  193 atcaaatatcaatattccgcaatacaattcacaaaattagataaactcaaaccaaacttaattggaataaaaacaagctaacactaaggaacacaaagta 292  Q
    |||||||||||||||||  ||| | |||| |||||| || | || |||||| ||||| |||||| ||| ||||||| || ||||||||||| ||||||      
T  26272677 atcaaatatcaatattcaacaacataatttacaaaactaaacaagctcaaatcaaacctaattgcaat-aaaacaacctgacactaaggaatacaaag-- 26272773  T
Q  293 tatgaaccaatgagttcaaacttaactggatttcgattgtgataaaattgactttaaaa 351  Q
    ||||||  ||||| || |||| ||| || | ||| |||||||| ||||||| |||||||    
T  26272774 tatgaattaatgatttgaaacctaattgaagttcaattgtgatgaaattgaatttaaaa 26272832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 775 - 866
Target Start/End: Complemental strand, 24560570 - 24560480
Alignment:
Q  775 atgttgtatcatcgtgatgttagatttaaattaaattcataaaagcttgccaaaaaatcttggcattgaagtgtcttatacttagtgtaaaa 866  Q
    |||| |||||||| ||||||| ||||| |||||||||    |||| ||| | |||| | || ||||||||||||||||||||||||||||||    
T  24560570 atgtagtatcatcatgatgttggatttcaattaaattttggaaaggttgtcgaaaa-tgtttgcattgaagtgtcttatacttagtgtaaaa 24560480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 5734 - 5806
Alignment:
Q  271 taacactaaggaacacaaagtatatgaaccaatgagttcaaacttaactggatttcgattgtgataaaattga 343  Q
    ||||||||||||||||||  ||||||||  ||||| || ||||||||||| | ||  ||||||||||||||||    
T  5734 taacactaaggaacacaagatatatgaattaatgatttgaaacttaactgaagtttaattgtgataaaattga 5806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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