View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245-Insertion-3 (Length: 877)
Name: NF5245-Insertion-3
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Original strand, 40617474 - 40618071
Alignment:
| Q |
7 |
atgattgtccatcgcactgtaagttgccggaggttcggcaagtcccaccatccccgcttggtggtggtggtgaaggtgatggttgggagcagatgcgggt |
106 |
Q |
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| T |
40617474 |
atgattgtccatcgcactgtaagttgccagaggttcggcaagtcccaccacccccgcttggtggtggtggtgaaggtgatggttgggagcagatgcgggt |
40617573 |
T |
|
| Q |
107 |
cccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcatgaggaaatagca |
206 |
Q |
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| T |
40617574 |
tccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccgttgcatgaggaaatagca |
40617673 |
T |
|
| Q |
207 |
tccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaatagagagtgagt |
306 |
Q |
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| T |
40617674 |
tccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctaaaaaaacaagatttgatatctgagccattgagattagaatagagagtgagt |
40617773 |
T |
|
| Q |
307 |
agattttgtgtgctcgagcttcaagtgttactttggcatatatagggcaattgcatgtccatatatatagagtcccaaatgttgtattgtacccaccatg |
406 |
Q |
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| T |
40617774 |
agtttttgtgtgcttgagcttcaagtgttactttggcatatatagggcaattgcatgtccatatatatagagtcccaaatgttgtattgtacccaccatg |
40617873 |
T |
|
| Q |
407 |
gag---ttattatacctaact-agaatacaaattgagcatctaattttgaaaattggaacaaattgcaagttttgactagtttttgcgagtcttttaatc |
502 |
Q |
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| T |
40617874 |
gagttattattatacctaaatcagaatacaaattgagcatctaattttgaaaattggaacaaatagcaagttttgactagtttttgcgagtcttttaatt |
40617973 |
T |
|
| Q |
503 |
atacttaattcattctaaactataatatatttttggcatgtcatacaagagaaatatacttagttttagatgggaaagataaattatgaattatttta |
600 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
40617974 |
atacttaattcattctaaactataagatatttttggcatgtcatacaagagaaatatacttaattttagatgggaaagataaattatgaattgtttta |
40618071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 40641069 - 40640878
Alignment:
| Q |
104 |
ggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcatgaggaaata |
203 |
Q |
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| T |
40641069 |
ggtcccaacgtcagggtcatcgttgcattttccattgatgcaaatgagttgaccagcgcagtcgttgagagttttacaaggtccgttgcatgaggaaata |
40640970 |
T |
|
| Q |
204 |
gcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaat |
295 |
Q |
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| T |
40640969 |
acatttgtaaggaatggaatgtttatgatgttgaaaaggaaaatggaagctaaaaaaacaagatttgaaacgtgagccattgagattagaat |
40640878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 71 - 301
Target Start/End: Original strand, 40628110 - 40628340
Alignment:
| Q |
71 |
tggtggtgaaggtgatggttgggagcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttg |
170 |
Q |
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||||||||| ||||| || | || ||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| | || || ||| |
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| T |
40628110 |
tggtggtgacggtgagggattggtgcagatgtgggtcccaatgtcggggtcatcgttgcatttgccgttgatgcaaatgagttgaccatcacaatcattg |
40628209 |
T |
|
| Q |
171 |
agagttctacaaggtccattgcatgaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttg |
270 |
Q |
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| T |
40628210 |
agagtgttgcatggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaaataagatttg |
40628309 |
T |
|
| Q |
271 |
atatctgagccattgagattagaatagagag |
301 |
Q |
| |
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|||| ||||||| |||||||||| |||||| |
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| T |
40628310 |
atatgcgagccatcgagattagaacagagag |
40628340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 685 - 781
Target Start/End: Original strand, 40618155 - 40618251
Alignment:
| Q |
685 |
ggttcgttgatattttaaaatcatttatagtttgagacaatattcttatgtaaagtgagtacaattcgagacagagaagtattatcattatccactc |
781 |
Q |
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| T |
40618155 |
ggttcgttgatattttaaaatcatctatagtttgagacaatatttttatgtaaagtgagtacaattcgggacagaggagtattgacattatccactc |
40618251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 95 - 301
Target Start/End: Original strand, 40610925 - 40611131
Alignment:
| Q |
95 |
gcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcat |
194 |
Q |
| |
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||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |
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| T |
40610925 |
gcagatgtgggtcccaatatctgggtcatcgttacattttccgttgatgcaaatgagttgaccataacagtcgttgagatcgttgcatcctccgttgcat |
40611024 |
T |
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| Q |
195 |
gaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaa |
294 |
Q |
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| T |
40611025 |
gaagaaatagcgttggtgaggaaaggaaggtttgtaatgttgaaaaggaaaatggaagctagaaaaacaagatttgatatgagagtcattgagagtatag |
40611124 |
T |
|
| Q |
295 |
tagagag |
301 |
Q |
| |
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||||||| |
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| T |
40611125 |
tagagag |
40611131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 796 - 877
Target Start/End: Original strand, 40618274 - 40618347
Alignment:
| Q |
796 |
aggtaatcttattttttggttgagccgagtattccttgcacttcatccaattttaaggttcaaatattagttgcgcttttct |
877 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
40618274 |
aggtaatcttgttttttggttgagcc--------cttgcacttcttccaattttaaggttcaaatattagttgtgcttttct |
40618347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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