View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5245-Insertion-4 (Length: 663)

Name: NF5245-Insertion-4
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5245-Insertion-4
NF5245-Insertion-4
[»] chr7 (5 HSPs)
chr7 (298-659)||(37020887-37021248)
chr7 (10-308)||(6372979-6373266)
chr7 (79-117)||(7942287-7942325)
chr7 (194-252)||(7942402-7942460)
chr7 (194-252)||(27759177-27759235)
[»] chr6 (3 HSPs)
chr6 (14-308)||(12197085-12197379)
chr6 (79-117)||(8317708-8317746)
chr6 (194-252)||(8317823-8317881)
[»] chr3 (5 HSPs)
chr3 (46-306)||(14638936-14639196)
chr3 (80-186)||(25430856-25430962)
chr3 (79-117)||(43552207-43552245)
chr3 (79-117)||(54169548-54169586)
chr3 (197-253)||(32370237-32370293)
[»] chr4 (4 HSPs)
chr4 (194-252)||(50630250-50630308)
chr4 (194-252)||(31356942-31357000)
chr4 (194-252)||(44149338-44149396)
chr4 (79-117)||(44149473-44149511)
[»] scaffold0325 (1 HSPs)
scaffold0325 (194-252)||(1-59)
[»] scaffold0044 (2 HSPs)
scaffold0044 (79-117)||(47069-47107)
scaffold0044 (194-252)||(47184-47242)
[»] chr8 (8 HSPs)
chr8 (79-117)||(199888-199926)
chr8 (194-252)||(200003-200061)
chr8 (79-117)||(314725-314763)
chr8 (194-252)||(314840-314898)
chr8 (195-253)||(18193251-18193309)
chr8 (79-117)||(30408007-30408045)
chr8 (194-252)||(30408122-30408180)
chr8 (194-252)||(43809802-43809860)
[»] chr5 (9 HSPs)
chr5 (79-117)||(7101578-7101616)
chr5 (194-252)||(7101693-7101751)
chr5 (194-252)||(12021069-12021127)
chr5 (79-117)||(12021204-12021242)
chr5 (194-252)||(16796449-16796507)
chr5 (79-117)||(16796584-16796622)
chr5 (194-252)||(30697576-30697634)
chr5 (194-252)||(37679816-37679874)
chr5 (79-117)||(37679951-37679989)
[»] chr2 (4 HSPs)
chr2 (194-252)||(8053172-8053230)
chr2 (79-117)||(8053307-8053345)
chr2 (194-252)||(36672831-36672889)
chr2 (79-117)||(36672966-36673004)
[»] chr1 (3 HSPs)
chr1 (194-252)||(26313793-26313851)
chr1 (79-117)||(26313928-26313966)
chr1 (194-252)||(39796175-39796233)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 298 - 659
Target Start/End: Complemental strand, 37021248 - 37020887
Alignment:
Q  298 atattcaccacagtagaaggatagaaaatgtgattaggcagaaagaaaagtgccccccaactagataggaaacaactaaaacttattttgtttgttatca 397  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37021248 atattcaccacagtagaaggacagaaaatgtgattaggcagaaagaaaagtgccccccaactagataggaaacaactaaaacttattttttttgttatca 37021149  T
Q  398 aacagtagacttgaccacagaaagttacagacaaattcataattcttaatcaaacacagaatatgtgaatgacttggaaccaagaacaagaataaaacaa 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37021148 aacagtagacttgaccacagaaagttacagacaaattcataattcttaatcaaacacagaatatgtgaatgacttggaaccaagaacaagaataaaataa 37021049  T
Q  498 gcttctcaacagacagatttgaagtaccttgagaaactagacgcacatgcaccgatttcaaatcaaggtgcaatacatacactactactgttcagaaatg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37021048 gcttctcaacagacagatttgaagtaccttgagaaactagacgcacatgcaccgatttcaaatcaaggtgcaatacatacactactactgttcagaaatg 37020949  T
Q  598 ttataccttattctgcaatcaagcaaactattccagtactgtttactactacaaatatatca 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37020948 ttataccttattctgcaatcaagcaaactattccagtactgtttactactacaaatatatca 37020887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 10 - 308
Target Start/End: Original strand, 6372979 - 6373266
Alignment:
Q  10 aaacaccttcaaatgactgacatatggttttctacctgaccaaacctcttcagacacctgattcttcaatttcttagtgggacatctatttaagatgtaa 109  Q
    ||||| ||||||||||||||   ||||||||||||| ||||||||||||||||  || |||||||||||||||||           |||||||||| |||    
T  6372979 aaacatcttcaaatgactgattgatggttttctacccgaccaaacctcttcaggaacttgattcttcaatttctt-----------tatttaagatataa 6373067  T
Q  110 gctgcagtattccctactttaccccaaaattcaagaggaagcttcttctctatcagcataatcctagccatatcaagtaaactcctattcctcctttcag 209  Q
    ||| |||||||| || ||| |||||| |||||| |||| ||||| |||||| |||||||| | ||||||||||| |||| |||| ||||||| ||||||     
T  6373068 gctacagtattcactgcttcaccccagaattcatgaggtagctttttctctttcagcatatttctagccatatcgagtagactcttattccttctttcaa 6373167  T
Q  210 caataccattgtgttgaggagtgtaaggagctgtcacttcatgaactataccctaacttgtgcaataagattcaaaatatctagaagtatattcaccac 308  Q
    ||| ||||||||||||||||||||||  || |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6373168 caagaccattgtgttgaggagtgtaattagttgtcacttcatgaattatactctaacttgtgcaataagattaaaaatctctagaagtatattcaccac 6373266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 7942287 - 7942325
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7942287 tttcttagtgggacatctgtttaagatgtatgctgcagt 7942325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 7942402 - 7942460
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  7942402 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 7942460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 27759235 - 27759177
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  27759235 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 27759177  T

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Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 12197085 - 12197379
Alignment:
Q  14 accttcaaatgactgacatatggttttctacctgaccaaacctcttcagacacctgattcttcaatttcttagtgggacatctatttaagatgtaagctg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12197085 accttcaaatgactgacatatggttttctacctgaccaaacctcttcaggcacttgattcttcaatttcttagtgggacatctatttaagatgtaagctg 12197184  T
Q  114 cagtattccctactttaccccaaaattcaagaggaagcttcttctctatcagcataatcctagccatatcaagtaaactcctattcctcctttcagcaat 213  Q
    || |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12197185 caatattccctactttaccccaaaattcatgaggtagcttcttctctatcagcataatcctagccatatcaagtaaactcttattcctcctttcagcaat 12197284  T
Q  214 accattgtgttgaggagtgtaaggagctgtcacttcatgaactataccctaacttgtgcaataagattcaaaatatctagaagtatattcaccac 308  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  12197285 accattgcgttgaggagtgtaaggagttgtcacttcatgaactataccctgacttgtgcagtaagattcaaaatatctagaagtatattcaccac 12197379  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 8317708 - 8317746
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8317708 tttcttagtgggacatctgtttaagatgtatgctgcagt 8317746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 8317823 - 8317881
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  8317823 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 8317881  T

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Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 46 - 306
Target Start/End: Complemental strand, 14639196 - 14638936
Alignment:
Q  46 tgaccaaacctcttcagacacctgattcttcaatttcttagtgggacatctatttaagatgtaagctgcagtattccctactttaccccaaaattcaaga 145  Q
    |||||||| |||||||| ||||| || |||||  |||||||| |||||||||||||  || |||| |||||| ||  || ||  ||||||||||||| ||    
T  14639196 tgaccaaatctcttcaggcaccttatccttcatcttcttagtaggacatctatttagaatataagttgcagtgttgactgctgcaccccaaaattcatga 14639097  T
Q  146 ggaagcttcttctctatcagcataatcctagccatatcaagtaaactcctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtca 245  Q
    || | ||| |||||| ||| |||| ||||  |||||||||| |||   |||||| ||||||||| || | ||||||||| |||||||||||||| ||| |    
T  14639096 ggtatctttttctctttcaacatactcctgaccatatcaagcaaatatctattcttcctttcagtaagagcattgtgttaaggagtgtaaggagttgtaa 14638997  T
Q  246 cttcatgaactataccctaacttgtgcaataagattcaaaatatctagaagtatattcacc 306  Q
    ||||||| | |||||||| | ||||||| ||||||||||||| | ||||||||||||||||    
T  14638996 cttcatggattataccctgatttgtgcagtaagattcaaaatctttagaagtatattcacc 14638936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 25430962 - 25430856
Alignment:
Q  80 ttcttagtgggacatctatttaagatgtaagctgcagtattccctactttaccccaaaattcaagaggaagcttcttctctatcagcataatcctagcca 179  Q
    |||||||||||||||||||| || ||||||||| |||||| |  | ||| || |||||| ||| | || | |||||| ||| ||| ||||| ||||||||    
T  25430962 ttcttagtgggacatctattcaatatgtaagctacagtatccaatgcttaactccaaaactcatgtggtaacttcttttctttcatcataaacctagcca 25430863  T
Q  180 tatcaag 186  Q
    |||||||    
T  25430862 tatcaag 25430856  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 43552245 - 43552207
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  43552245 tttcttagtgggacatctgtttaagatgtatgctgcagt 43552207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 54169548 - 54169586
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  54169548 tttcttagtgggacatctgtttaagatgtatgctgcagt 54169586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 32370237 - 32370293
Alignment:
Q  197 ttcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatga 253  Q
    ||||||||||| || | |||||||||||||||||| || |||| ||| |||||||||    
T  32370237 ttcctcctttctgctaaaccattgtgttgaggagtatagggagatgtaacttcatga 32370293  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 50630250 - 50630308
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    ||||||||||||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  50630250 ctattcctcctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 50630308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 31357000 - 31356942
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  31357000 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 31356942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 44149396 - 44149338
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  44149396 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 44149338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 44149511 - 44149473
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  44149511 tttcttagtgggacatctgtttaagatgtatgctgcagt 44149473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 59 - 1
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  59 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 47069 - 47107
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  47069 tttcttagtgggacatctgtttaagatgtatgctgcagt 47107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 47184 - 47242
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  47184 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 47242  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 199888 - 199926
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  199888 tttcttagtgggacatctgtttaagatgtatgctgcagt 199926  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 200003 - 200061
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  200003 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 200061  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 314725 - 314763
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  314725 tttcttagtgggacatctgtttaagatgtatgctgcagt 314763  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 314840 - 314898
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  314840 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 314898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 18193309 - 18193251
Alignment:
Q  195 tattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatga 253  Q
    ||||||||||||| || | |||||||||||||||||| || |||| ||| |||||||||    
T  18193309 tattcctcctttctgctaaaccattgtgttgaggagtatagggagatgtgacttcatga 18193251  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 30408007 - 30408045
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  30408007 tttcttagtgggacatctgtttaagatgtatgctgcagt 30408045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 30408122 - 30408180
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  30408122 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 30408180  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 43809802 - 43809860
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  43809802 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 43809860  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 7101578 - 7101616
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7101578 tttcttagtgggacatctgtttaagatgtatgctgcagt 7101616  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 7101693 - 7101751
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  7101693 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 7101751  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 12021127 - 12021069
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  12021127 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 12021069  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 12021242 - 12021204
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  12021242 tttcttagtgggacatctgtttaagatgtatgctgcagt 12021204  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 16796507 - 16796449
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  16796507 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 16796449  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 16796622 - 16796584
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  16796622 tttcttagtgggacatctgtttaagatgtatgctgcagt 16796584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 30697634 - 30697576
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  30697634 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 30697576  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 37679874 - 37679816
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  37679874 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 37679816  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 37679989 - 37679951
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  37679989 tttcttagtgggacatctgtttaagatgtatgctgcagt 37679951  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 8053230 - 8053172
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  8053230 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 8053172  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 8053345 - 8053307
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8053345 tttcttagtgggacatctgtttaagatgtatgctgcagt 8053307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 36672889 - 36672831
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  36672889 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 36672831  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 36673004 - 36672966
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  36673004 tttcttagtgggacatctgtttaagatgtatgctgcagt 36672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 26313851 - 26313793
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  26313851 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 26313793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 26313966 - 26313928
Alignment:
Q  79 tttcttagtgggacatctatttaagatgtaagctgcagt 117  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  26313966 tttcttagtgggacatctgtttaagatgtatgctgcagt 26313928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 39796233 - 39796175
Alignment:
Q  194 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagctgtcacttcatg 252  Q
    |||||||| |||||||| | |||||||||||| ||||| |||||||| || ||||||||    
T  39796233 ctattccttctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 39796175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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