View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245-Insertion-5 (Length: 663)
Name: NF5245-Insertion-5
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 29 - 505
Target Start/End: Original strand, 50460133 - 50460619
Alignment:
| Q |
29 |
ttattagtttagacatttttcttagacatattgatttgcattcgttggtataaatttgtcaattttaactaccactcttattttgatttatctttttgat |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
50460133 |
ttattagtttagacatttttcttagacatattgatttgcattcattggtataaatttgtcaattttaactaccactcctattttgatttctctttctgat |
50460232 |
T |
|
| Q |
129 |
agctcacatatccaaagataattnnnnnnnnnnnnngttgtcaaagatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtg |
228 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460233 |
agctcacatatccaaagataattaaaaaacaaaaa-gttgtcaaagatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtg |
50460331 |
T |
|
| Q |
229 |
ttggcaattggtatgaaattgagtttgtaatgaatgctctgaaatatgcccagaaacttgagcgaatagttttgagtccttatcgtcgagaacacgactc |
328 |
Q |
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| T |
50460332 |
ttggcaattggtatgaaattgagtttgtaatgaatgctctgaaatatgcccagaaacatgagcgaatagttttgagtccttatcgtcgagaacacgactc |
50460431 |
T |
|
| Q |
329 |
ggtggattgga-----------tctgtgtggtctcaaaatgggtgtcaaaggattagagaaaagcttcaaagtgaagatgtagttggacgagaaaaagtt |
417 |
Q |
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| T |
50460432 |
ggtggattggaaatctgatcctcctgtgtggtctcaaaatgggtgtcaaaggattagacaaaagcttcaaagtgaagatgtagttggacgagaaaaagtt |
50460531 |
T |
|
| Q |
418 |
gtgtttgtataagagtatataannnnnnncctttgtgggttgagatgattgatagactaatatttatatgagttgatatttgaaaaaa |
505 |
Q |
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| T |
50460532 |
gtgtttgtataagagtatataatttttttcctttgtgggttgagatgattgatagattaatatttatatgtaatgatatttgaaaaaa |
50460619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 50460753 - 50460790
Alignment:
| Q |
625 |
ttgtacaaatatcatttctttatttatattgctcataa |
662 |
Q |
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| T |
50460753 |
ttgtacaaatatcatttctttatttatattgctcataa |
50460790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 48107076 - 48106946
Alignment:
| Q |
174 |
gatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaat |
273 |
Q |
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| T |
48107076 |
gatgttgaaacattctctcatgacgaagtaaaagttattgaattaggaggctgtgttggcaattggtatgaaattgaatttgttatgaatgttctaaaat |
48106977 |
T |
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| Q |
274 |
atgcccagaaacttgagcgaatagttttgag |
304 |
Q |
| |
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| T |
48106976 |
atgcccacaaacttgagcaaatagttgtgag |
48106946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 47051040 - 47050907
Alignment:
| Q |
174 |
gatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaat |
273 |
Q |
| |
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|||||||| |||| |||||||| || || || |||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||| |||| |
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| T |
47051040 |
gatgttgagatattatctcatgatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaat |
47050941 |
T |
|
| Q |
274 |
atgcccagaaacttgagcgaatagttttgagtcc |
307 |
Q |
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|||||| || ||||||| |||||| |||||||| |
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| T |
47050940 |
gtgcccacaagcttgagcaaatagtgttgagtcc |
47050907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 48452992 - 48452879
Alignment:
| Q |
175 |
atgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaata |
274 |
Q |
| |
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||||||| |||||||| ||||| || || ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | ||||| |
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| T |
48452992 |
atgttgatatatgctcacatgaaaaggtcggagttattgaattgggaggttgtgttggcaattcgtatgaaattgagtttgtcatgaatg--ttaaaata |
48452895 |
T |
|
| Q |
275 |
tgcccagaaacttgag |
290 |
Q |
| |
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|||||| ||||||||| |
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| T |
48452894 |
tgcccacaaacttgag |
48452879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 48895727 - 48895828
Alignment:
| Q |
174 |
gatgttgaaatatgctctcatgacga-gatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaa |
272 |
Q |
| |
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|||||||||| || |||||||||||| | | ||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||| |
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| T |
48895727 |
gatgttgaaacattctctcatgacgaagttaaga-ttattgaattgggaggttgtgttggcaattggtttgaaattgagtttgttatgaatgttctaaaa |
48895825 |
T |
|
| Q |
273 |
tat |
275 |
Q |
| |
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||| |
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|
| T |
48895826 |
tat |
48895828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 47929426 - 47929519
Alignment:
| Q |
206 |
agttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaatatgcccagaaacttgagcgaatagtt |
299 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||| | | |||||||| || ||||||||| ||||||| |
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| T |
47929426 |
agttattgaatttggaggatgtgttggcaattggtttgaaattgagtttgttatgaatgttataaaatatgcacacaaacttgagaaaatagtt |
47929519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 48106083 - 48105967
Alignment:
| Q |
174 |
gatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaat |
273 |
Q |
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||||||||||||| ||||||||| || | | |||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||| | | |||| |
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| T |
48106083 |
gatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgttaggaatgttttaaaat |
48105985 |
T |
|
| Q |
274 |
atgcccagaaacttgagc |
291 |
Q |
| |
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||| || |||||||||| |
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| T |
48105984 |
atgttcataaacttgagc |
48105967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 414
Target Start/End: Complemental strand, 48452834 - 48452761
Alignment:
| Q |
341 |
ctgtgtggtctcaaaatgggtgtcaaaggattagagaaaagcttcaaagtgaagatgtagttggacgagaaaaa |
414 |
Q |
| |
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||||||||| |||||||||||||||| |||| | ||||| || ||| ||||||||| |||||||||||||||| |
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| T |
48452834 |
ctgtgtggtttcaaaatgggtgtcaagggatcattgaaaaactccaaggtgaagatgaagttggacgagaaaaa |
48452761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 304
Target Start/End: Original strand, 39403547 - 39403663
Alignment:
| Q |
188 |
ctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaatatgcccagaaactt |
287 |
Q |
| |
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||||||||| ||| | | |||||||||||| | ||| |||||||||||||||| ||||||||||||||| | ||||| ||| ||||||||||| ||||| |
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| T |
39403547 |
ctctcatgatgagctaaaagttattgaatttgaaggttgtgttggcaattggtttgaaattgagtttgttacgaatgttctaaaatatgcccataaactc |
39403646 |
T |
|
| Q |
288 |
gagcgaatagttttgag |
304 |
Q |
| |
|
|||| ||||||| |||| |
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| T |
39403647 |
gagcaaatagttgtgag |
39403663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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