View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5245-Insertion-6 (Length: 522)

Name: NF5245-Insertion-6
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5245-Insertion-6
NF5245-Insertion-6
[»] chr2 (4 HSPs)
chr2 (419-522)||(34377411-34377514)
chr2 (419-522)||(43409169-43409272)
chr2 (288-337)||(34377588-34377637)
chr2 (307-353)||(43409339-43409385)
[»] chr5 (5 HSPs)
chr5 (419-522)||(22114570-22114673)
chr5 (419-522)||(27515201-27515304)
chr5 (287-351)||(22114746-22114807)
chr5 (287-351)||(27515067-27515128)
chr5 (300-351)||(42918821-42918870)
[»] chr4 (5 HSPs)
chr4 (419-522)||(10350056-10350159)
chr4 (420-522)||(15500026-15500128)
chr4 (423-522)||(13026254-13026353)
chr4 (291-349)||(40697959-40698014)
chr4 (318-351)||(13026140-13026173)
[»] chr1 (5 HSPs)
chr1 (419-522)||(48709683-48709786)
chr1 (419-522)||(50142782-50142885)
chr1 (419-522)||(43440775-43440878)
chr1 (424-517)||(47985665-47985758)
chr1 (423-495)||(15706218-15706290)
[»] chr6 (1 HSPs)
chr6 (287-353)||(13244413-13244479)
[»] chr7 (2 HSPs)
chr7 (289-353)||(31302589-31302653)
chr7 (419-478)||(31302463-31302522)
[»] chr3 (2 HSPs)
chr3 (287-349)||(22285199-22285258)
chr3 (423-522)||(22285334-22285432)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 34377514 - 34377411
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34377514 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaaaatcaaacaaggcatagtgcgatttcagccaccagaacgtttggagtttc 34377415  T
Q  519 acct 522  Q
    ||||    
T  34377414 acct 34377411  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 43409272 - 43409169
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43409272 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaaaatcaaacaaggcatagtgcgatttcagccaccagaacgtttggagtttc 43409173  T
Q  519 acct 522  Q
    ||||    
T  43409172 acct 43409169  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 34377637 - 34377588
Alignment:
Q  288 aagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34377637 aagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagc 34377588  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 43409385 - 43409339
Alignment:
Q  307 atattaaagaaaaacagacagctcctcaagcacaaggtgtgcttatg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43409385 atattaaagaaaaacagacagctcctcaagcacaaggtgtgcttatg 43409339  T

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Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 22114673 - 22114570
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  22114673 taaagcttgaatacaacataaaggatttagcctccaataggaatactcaaaatcgaacaaggcatagtgcaatttcagccaccagaacgtttggagtttc 22114574  T
Q  519 acct 522  Q
    ||||    
T  22114573 acct 22114570  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 27515201 - 27515304
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    ||||||||| |||||||||||||| ||||||||||||| | ||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  27515201 taaagcttgcatacaacataaaggatttagcctccaatagaaatactcaaaatcgaacaaggcatagtgcgatttcagccagcagaacgtttggagtttc 27515300  T
Q  519 acct 522  Q
    ||||    
T  27515301 acct 27515304  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 22114807 - 22114746
Alignment:
Q  287 gaagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgctta 351  Q
    ||||||||||| ||||| || |||||||||||  |||||||||||||||||||||||||||||||    
T  22114807 gaagaagctaaacaaaattt-tattaaagaaa--cagacagctcctcaagcacaaggtgtgctta 22114746  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 27515067 - 27515128
Alignment:
Q  287 gaagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgctta 351  Q
    ||||||||||| ||||| || ||||||||||| |  |||||||||||||||| ||||||||||||    
T  27515067 gaagaagctaaacaaaattt-tattaaagaaata--gacagctcctcaagcataaggtgtgctta 27515128  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 42918870 - 42918821
Alignment:
Q  300 aaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgctta 351  Q
    |||||||||||||||| ||  |||||| |||||||||||||||| |||||||    
T  42918870 aaaaattatattaaagcaa--cagacaactcctcaagcacaaggagtgctta 42918821  T

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Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 10350159 - 10350056
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    |||||||| ||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  10350159 taaagcttaaatacaacataaaggatttaacctccaataggaatactcaaaatcgaacaaggcatagtgcgatttcagccaccagaacgtttggagtttc 10350060  T
Q  519 acct 522  Q
    ||||    
T  10350059 acct 10350056  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 420 - 522
Target Start/End: Original strand, 15500026 - 15500128
Alignment:
Q  420 aaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttca 519  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||  |||||||||||||| |||||||||||||||||||||||    
T  15500026 aaagcttgaatacaacataaaggatttaacctccaataggaatactcaaaatcgaacaagacatagtgcgatttcaaccaccagaacgtttggagtttca 15500125  T
Q  520 cct 522  Q
    |||    
T  15500126 cct 15500128  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 522
Target Start/End: Original strand, 13026254 - 13026353
Alignment:
Q  423 gcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttcacct 522  Q
    ||||||| |||||||||||| ||||||||||||| ||  || |||| ||| ||||||   | ||| ||||||||||||||  ||||||||||||| ||||    
T  13026254 gcttgaagacaacataaaggatttagcctccaataggggtaatcaaaatcgaacaagacgttgtgtgatttcagccaccaatacgtttggagtttaacct 13026353  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 40698014 - 40697959
Alignment:
Q  291 aagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgct 349  Q
    ||||||||||||| || |||||||||||  |||||||||||||||||||||||||||||    
T  40698014 aagctaagcaaaactt-tattaaagaaa--cagacagctcctcaagcacaaggtgtgct 40697959  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 13026140 - 13026173
Alignment:
Q  318 aaacagacagctcctcaagcacaaggtgtgctta 351  Q
    ||||||||||||||||||||||||| ||||||||    
T  13026140 aaacagacagctcctcaagcacaagatgtgctta 13026173  T

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Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 48709683 - 48709786
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    ||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  48709683 taaagtttgaatacaacataaaggatttaacctccaataggaatactcaaaatcgaacaaggcatagtgcgatttcagccaccagaacgtttggagtttc 48709782  T
Q  519 acct 522  Q
    ||||    
T  48709783 acct 48709786  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 419 - 522
Target Start/End: Original strand, 50142782 - 50142885
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    ||||||| |||||||||||||||| |||| |||||||| | ||||||||| ||| | ||| | |||||||||||||| ||||||||||||||||||||||    
T  50142782 taaagctcgaatacaacataaaggatttaacctccaatggaaatactcaaaatcgatcaaagcatagtgcgatttcaaccaccagaacgtttggagtttc 50142881  T
Q  519 acct 522  Q
    ||||    
T  50142882 acct 50142885  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 43440878 - 43440775
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttc 518  Q
    ||||||| |||||||||||||||| |||| | |||||| ||||||| ||| ||| ||||| | |||||||||||||| ||||| ||| ||||||||||||    
T  43440878 taaagctcgaatacaacataaaggatttaacatccaataggaatacccaaaatcgaacaaagcatagtgcgatttcaaccacccgaatgtttggagtttc 43440779  T
Q  519 acct 522  Q
    ||||    
T  43440778 acct 43440775  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 517
Target Start/End: Original strand, 47985665 - 47985758
Alignment:
Q  424 cttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagttt 517  Q
    |||||| |||||||||||| ||||||||| ||| ||  || |||| ||| ||||||   ||||||||||||||||||||  |||||||||||||    
T  47985665 cttgaagacaacataaaggatttagcctcaaataggggtaatcaaaatcgaacaagacgtagtgcgatttcagccaccaagacgtttggagttt 47985758  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 495
Target Start/End: Complemental strand, 15706290 - 15706218
Alignment:
Q  423 gcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttca 495  Q
    ||||||| ||||||||| || ||||||||||||| ||  || |||| ||| ||||||  ||||||||||||||    
T  15706290 gcttgaagacaacataatggatttagcctccaataggggtaatcaaaatcgaacaagacatagtgcgatttca 15706218  T

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Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 13244479 - 13244413
Alignment:
Q  287 gaagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgcttatg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244479 gaagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgcttatg 13244413  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 31302653 - 31302589
Alignment:
Q  289 agaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgcttatg 353  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  31302653 agaagctaagcaaaaattatattaaagaaaaagagacagctcctcaagcacaaattgtgcttatg 31302589  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 478
Target Start/End: Complemental strand, 31302522 - 31302463
Alignment:
Q  419 taaagcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaa 478  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  31302522 taaaacttgaatacaacataaagggtttaacctccaattagaatactcaaaatcaaacaa 31302463  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 22285199 - 22285258
Alignment:
Q  287 gaagaagctaagcaaaaattatattaaagaaaaacagacagctcctcaagcacaaggtgtgct 349  Q
    |||||| |||||||||| || |||||||||||  |||||||||||||||||||||||||||||    
T  22285199 gaagaaactaagcaaaactt-tattaaagaaa--cagacagctcctcaagcacaaggtgtgct 22285258  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 522
Target Start/End: Original strand, 22285334 - 22285432
Alignment:
Q  423 gcttgaatacaacataaagggtttagcctccaattggaatactcaacatcaaacaaggtatagtgcgatttcagccaccagaacgtttggagtttcacct 522  Q
    ||||||| ||||| ||| |||||||||||||||| |  ||| |||| ||| |||||   |||||||||||||| |||||| ||||||||||| |||||||    
T  22285334 gcttgaagacaacttaaggggtttagcctccaatagagataatcaaaatcgaacaaaacatagtgcgatttcaaccacca-aacgtttggagcttcacct 22285432  T

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