View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5245-Insertion-8 (Length: 421)

Name: NF5245-Insertion-8
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5245-Insertion-8
NF5245-Insertion-8
[»] chr3 (21 HSPs)
chr3 (92-421)||(139913-140234)
chr3 (29-70)||(139850-139891)
chr3 (104-177)||(36189506-36189579)
chr3 (95-143)||(34958259-34958307)
chr3 (92-151)||(2128334-2128393)
chr3 (109-167)||(36646449-36646507)
chr3 (116-172)||(34234835-34234891)
chr3 (95-167)||(44061090-44061162)
chr3 (109-160)||(30956700-30956751)
chr3 (109-160)||(30972512-30972563)
chr3 (102-141)||(50760552-50760591)
chr3 (109-151)||(15304430-15304472)
chr3 (95-141)||(44295463-44295509)
chr3 (109-191)||(52618948-52619029)
chr3 (104-149)||(1395611-1395656)
chr3 (109-162)||(42808924-42808977)
chr3 (95-143)||(905061-905109)
chr3 (107-151)||(10101559-10101603)
chr3 (107-151)||(10212484-10212528)
chr3 (103-151)||(32703077-32703125)
chr3 (111-151)||(36783417-36783457)
[»] chr7 (21 HSPs)
chr7 (92-191)||(12110288-12110386)
chr7 (102-174)||(35536045-35536117)
chr7 (103-167)||(28613601-28613665)
chr7 (98-149)||(28128479-28128530)
chr7 (102-149)||(32791836-32791883)
chr7 (92-139)||(41668205-41668252)
chr7 (92-139)||(41668883-41668930)
chr7 (95-162)||(42656446-42656513)
chr7 (107-143)||(12110532-12110568)
chr7 (112-171)||(39279910-39279969)
chr7 (109-151)||(21853199-21853241)
chr7 (95-149)||(26024077-26024131)
chr7 (109-151)||(43152985-43153027)
chr7 (95-150)||(744437-744496)
chr7 (102-151)||(46945847-46945896)
chr7 (103-176)||(49060479-49060552)
chr7 (104-176)||(6824858-6824930)
chr7 (95-131)||(27508126-27508162)
chr7 (102-166)||(31341132-31341196)
chr7 (93-141)||(36874058-36874106)
chr7 (107-151)||(43318611-43318655)
[»] chr1 (24 HSPs)
chr1 (96-154)||(34404968-34405026)
chr1 (268-342)||(5122735-5122809)
chr1 (99-143)||(15942838-15942882)
chr1 (103-167)||(36151572-36151636)
chr1 (102-169)||(34619443-34619510)
chr1 (92-143)||(35017502-35017553)
chr1 (94-143)||(4700157-4700206)
chr1 (129-173)||(51190826-51190870)
chr1 (92-143)||(2831668-2831719)
chr1 (102-161)||(4699685-4699744)
chr1 (92-139)||(33527242-33527289)
chr1 (92-138)||(3924552-3924598)
chr1 (109-167)||(33186024-33186082)
chr1 (109-167)||(38578472-38578530)
chr1 (101-143)||(50319229-50319271)
chr1 (104-149)||(567488-567533)
chr1 (102-151)||(4549804-4549853)
chr1 (104-149)||(17778898-17778943)
chr1 (109-149)||(36495303-36495344)
chr1 (102-162)||(7028230-7028290)
chr1 (95-143)||(23370389-23370437)
chr1 (95-167)||(37841929-37842001)
chr1 (127-167)||(51359509-51359549)
chr1 (95-143)||(52286609-52286657)
[»] chr8 (14 HSPs)
chr8 (92-143)||(34522147-34522198)
chr8 (92-159)||(926415-926483)
chr8 (95-151)||(42597332-42597388)
chr8 (95-169)||(3537096-3537170)
chr8 (95-143)||(26215427-26215475)
chr8 (104-208)||(34849043-34849145)
chr8 (93-161)||(38537521-38537588)
chr8 (103-161)||(7646145-7646203)
chr8 (115-176)||(2482817-2482877)
chr8 (127-176)||(6509361-6509410)
chr8 (102-151)||(14482140-14482189)
chr8 (95-151)||(42568746-42568800)
chr8 (95-151)||(11841276-11841332)
chr8 (104-188)||(13561359-13561442)
[»] chr5 (15 HSPs)
chr5 (95-162)||(465885-465952)
chr5 (103-161)||(18857473-18857531)
chr5 (95-167)||(42569047-42569119)
chr5 (103-146)||(12407749-12407792)
chr5 (129-191)||(12425536-12425597)
chr5 (103-151)||(912731-912780)
chr5 (102-143)||(7096218-7096259)
chr5 (92-137)||(9106753-9106798)
chr5 (110-151)||(10363696-10363737)
chr5 (92-145)||(11054114-11054167)
chr5 (102-151)||(39128577-39128626)
chr5 (95-151)||(7674579-7674635)
chr5 (103-143)||(10125810-10125850)
chr5 (95-123)||(30988188-30988216)
chr5 (97-161)||(37112331-37112395)
[»] chr2 (27 HSPs)
chr2 (95-176)||(33931628-33931709)
chr2 (94-161)||(43259764-43259831)
chr2 (115-161)||(40808273-40808319)
chr2 (95-151)||(7928377-7928433)
chr2 (95-143)||(43530202-43530250)
chr2 (104-151)||(4090289-4090336)
chr2 (95-143)||(40401208-40401258)
chr2 (98-161)||(43299476-43299539)
chr2 (108-158)||(787275-787325)
chr2 (102-191)||(3611164-3611252)
chr2 (102-162)||(36114595-36114655)
chr2 (95-151)||(39567834-39567890)
chr2 (114-162)||(41880575-41880623)
chr2 (92-143)||(28039423-28039474)
chr2 (102-176)||(5133710-5133784)
chr2 (129-191)||(12464517-12464578)
chr2 (95-143)||(6887354-6887400)
chr2 (95-140)||(32837242-32837287)
chr2 (102-143)||(39621891-39621932)
chr2 (109-158)||(40758968-40759017)
chr2 (96-165)||(44786474-44786543)
chr2 (103-139)||(626306-626342)
chr2 (109-149)||(31461383-31461423)
chr2 (131-167)||(33941876-33941912)
chr2 (111-151)||(40842420-40842460)
chr2 (112-160)||(41407023-41407071)
chr2 (95-151)||(42907290-42907346)
[»] chr4 (23 HSPs)
chr4 (110-166)||(17884014-17884070)
chr4 (104-167)||(52170053-52170116)
chr4 (95-149)||(6364080-6364134)
chr4 (104-149)||(42121427-42121472)
chr4 (92-141)||(53422290-53422339)
chr4 (95-151)||(30024631-30024687)
chr4 (95-177)||(26520286-26520368)
chr4 (102-167)||(2996511-2996576)
chr4 (102-143)||(38478680-38478721)
chr4 (100-176)||(56480284-56480360)
chr4 (95-158)||(3155534-3155597)
chr4 (95-166)||(7601690-7601761)
chr4 (94-161)||(21469956-21470023)
chr4 (109-176)||(54325095-54325162)
chr4 (95-161)||(45104480-45104546)
chr4 (96-161)||(6466119-6466184)
chr4 (129-190)||(35290232-35290292)
chr4 (110-151)||(39438619-39438660)
chr4 (95-164)||(55084544-55084613)
chr4 (95-143)||(17223116-17223164)
chr4 (103-151)||(42321962-42322010)
chr4 (103-143)||(51044550-51044590)
chr4 (111-191)||(51630058-51630137)
[»] chr6 (18 HSPs)
chr6 (92-159)||(33080657-33080724)
chr6 (95-176)||(9093614-9093695)
chr6 (96-176)||(34611804-34611884)
chr6 (98-175)||(33736772-33736849)
chr6 (104-167)||(415244-415307)
chr6 (92-167)||(4006642-4006717)
chr6 (106-161)||(31776348-31776402)
chr6 (103-161)||(24836272-24836330)
chr6 (95-173)||(32206081-32206159)
chr6 (102-151)||(29274312-29274361)
chr6 (102-162)||(507158-507218)
chr6 (95-147)||(781316-781368)
chr6 (109-161)||(2735014-2735066)
chr6 (109-161)||(4248903-4248955)
chr6 (95-143)||(10657182-10657230)
chr6 (109-177)||(22742311-22742379)
chr6 (108-172)||(24782003-24782067)
chr6 (102-162)||(32386171-32386231)
[»] scaffold0022 (1 HSPs)
scaffold0022 (95-140)||(143155-143200)
[»] scaffold0024 (2 HSPs)
scaffold0024 (95-162)||(21350-21417)
scaffold0024 (102-151)||(27514-27563)
[»] scaffold0590 (1 HSPs)
scaffold0590 (102-143)||(1165-1206)
[»] scaffold0275 (1 HSPs)
scaffold0275 (102-143)||(2769-2810)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 92 - 421
Target Start/End: Original strand, 139913 - 140234
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  139913 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 140012  T
Q  192 tggaaacttatggaaatgtcataagttctccaaaatagtctcagtgcttattctggtagataaagtgagtgtttggaaagtcacattcttggcgtgtgtt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140013 tggaaacttatggaaatgtcataagttctccaaaatagtctcagtgcttattctggtagataaagtgagtgtttggaaagtcacattcttggcgtgtgtt 140112  T
Q  292 ttccaaactctataaataatagcttctgaaaaatcacgtcaaaatgtgcctgtaggcggctaggcgcgatattgcccctctcactgctaaaccaaacaat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||| |||||||||||||||||||||||||||||||||    
T  140113 ttccaaactctataaataatagcttctgaaaaatcacgtcaaaatttgcctg--------taggcgtgatattgcccctctcactgctaaaccaaacaat 140204  T
Q  392 ctaaaactcaaataagttaatccaaacagg 421  Q
    ||||||||||||||||| ||||||||||||    
T  140205 ctaaaactcaaataagtcaatccaaacagg 140234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 139850 - 139891
Alignment:
Q  29 caaataagttgcgtatccaaacaggcactagtgggataagga 70  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  139850 caaataagttgcgtatccaaacaggcactagtgggataagga 139891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 36189506 - 36189579
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctattttt 177  Q
    |||| ||||||||||||| ||||| ||||||||||||||| ||||||| |||||||| | |||| |||||||||    
T  36189506 tatgtataagctatttctcttacaaaagataaaataaagttaaattgtttttgtatatgatataagctattttt 36189579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 34958259 - 34958307
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  34958259 ataagcacttatgaataaactatttctataacacaagataaaataaagt 34958307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 2128393 - 2128334
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||  ||||| ||||||||||||||| ||| ||||||||||||||| |||||||    
T  2128393 agcataagcgtttatgtataagctatttctataacaaaagataaaataaagttaaattgt 2128334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 36646507 - 36646449
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| ||  |||||||||||    
T  36646507 ataagctatttctatgacaaaagataaaataaagtataattgttttcatataagttata 36646449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 34234835 - 34234891
Alignment:
Q  116 atttctattacacaagataaaataaagtaaaattgtatttgtataagttataggcta 172  Q
    |||||||||||| ||||||||||||||| ||| ||| ||| ||||||||||| ||||    
T  34234835 atttctattacaaaagataaaataaagttaaaatgtttttctataagttataagcta 34234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 44061162 - 44061090
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    |||||||||| || |||||||||||||||  || |||||||||||| || ||||||| ||| |||||| ||||    
T  44061162 ataagcacttctgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctata 44061090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 30956751 - 30956700
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtata 160  Q
    |||||||||||||||  || ||||||||||||||| ||||||| ||||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 30972563 - 30972512
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtata 160  Q
    |||||||||||||||  || ||||||||||||||| ||||||| ||||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30972512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 50760552 - 50760591
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaa 141  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  50760552 cttatgaataagctatttctatgactcaagataaaataaa 50760591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 15304472 - 15304430
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaaattgt 15304430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 44295463 - 44295509
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaa 141  Q
    |||||| ||| |||||||||||||||||| || ||||||||||||||    
T  44295463 ataagcgcttgtgaataagctatttctataactcaagataaaataaa 44295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 52618948 - 52619029
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    ||||||||||||||  ||| | ||| ||||||||| ||||||| ||  ||||||||||| |||  ||||||||||||||||||    
T  52618948 ataagctatttctaaaacaaatgattaaataaagttaaattgttttcatataagttataagct-gttttcacaagctatcttg 52619029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 1395611 - 1395656
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    |||| ||||||||||||||| ||| ||||||||||||||| |||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaatt 1395656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 42808924 - 42808977
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    ||||||| ||||||| ||| ||||||||||||||| ||||||| ||| ||||||    
T  42808924 ataagctgtttctataacaaaagataaaataaagttaaattgtttttatataag 42808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 905109 - 905061
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| |||| | ||||||||||||||| ||| |||||||||||||||    
T  905109 ataagcgcttaagtataagctatttctataacaaaagataaaataaagt 905061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 10101603 - 10101559
Alignment:
Q  107 gaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||| ||||||||| ||| ||||||||||||||| |||||||    
T  10101603 gaataagttatttctataacaaaagataaaataaagttaaattgt 10101559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 10212528 - 10212484
Alignment:
Q  107 gaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||| ||||||||| ||| ||||||||||||||| |||||||    
T  10212528 gaataagttatttctataacaaaagataaaataaagttaaattgt 10212484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 32703077 - 32703125
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||| ||||||||||||||||| | ||||||||||||| | |||||||    
T  32703077 ttatgtataagctatttctattataaaagataaaataaactcaaattgt 32703125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 36783457 - 36783417
Alignment:
Q  111 aagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  36783457 aagctatttctataccaaaagataaaataaagtaaaattgt 36783417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 12110288 - 12110386
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||| |||| |||  |||||| |||||||||||    
T  12110288 agcataagcacttatgaataacctatttctattacacaagataaaataaagtcaaattgttttggtataagctataagct-gttttcataagctatcttg 12110386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 35536045 - 35536117
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatt 174  Q
    |||||| ||||||||||||||| ||| ||||||||||||||| ||||||| ||  ||||||||||| ||||||    
T  35536045 cttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataagttataagctatt 35536117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 28613665 - 28613601
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||| ||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||||||    
T  28613665 ttatgtataagctatttttataacaaaagataaaacaaagttaaattgtttttgtataagttata 28613601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 28128530 - 28128479
Alignment:
Q  98 agcacttatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    |||||||||||||||  |||||||||||||||||||||||| |||| |||||    
T  28128530 agcacttatgaataacatatttctattacacaagataaaatgaagtcaaatt 28128479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 32791883 - 32791836
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  32791883 cttataaataagctacttctattacacaagataaaataaagtgaaatt 32791836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 41668252 - 41668205
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaata 139  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||    
T  41668252 agcataagcgcttatgaataagctatttctataacccaagataaaata 41668205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 41668930 - 41668883
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaata 139  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||    
T  41668930 agcataagcgcttatgaataagctatttctataacccaagataaaata 41668883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 42656446 - 42656513
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    ||||||||||||  ||||||||||||||| ||| ||||||||||||||| ||||  | ||||||||||    
T  42656446 ataagcacttatatataagctatttctataacaaaagataaaataaagtcaaatcatttttgtataag 42656513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 12110532 - 12110568
Alignment:
Q  107 gaataagctatttctattacacaagataaaataaagt 143  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12110532 gaataagctatttttattacacaagataaaataaagt 12110568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 39279910 - 39279969
Alignment:
Q  112 agctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggct 171  Q
    ||||||||||||| || |||||||||| |||| ||||||| | |||||| ||||||||||    
T  39279910 agctatttctattgcaaaagataaaattaagttaaattgtttgtgtatatgttataggct 39279969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 21853241 - 21853199
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||    
T  21853241 ataagttatttctattacaaaagataaaataaagttaaattgt 21853199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 26024131 - 26024077
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    |||| |||||||||||||| ||||||||||| | ||||| ||||||||| |||||    
T  26024131 ataaacacttatgaataagttatttctattatataagatgaaataaagtcaaatt 26024077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 43153027 - 43152985
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||    
T  43153027 ataagctatttctataacaaaagataaaataaagttaaattgt 43152985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 744496 - 744437
Alignment:
Q  95 ataagcacttatgaataagctatt-tc---tattacacaagataaaataaagtaaaattg 150  Q
    |||||||||||||||||||||||| ||   ||||||||| ||||||||||||| ||||||    
T  744496 ataagcacttatgaataagctattatctattattacacatgataaaataaagtcaaattg 744437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 46945847 - 46945896
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||||||||||| ||| |||||||||||||| || | |||||||    
T  46945847 cttatgaataagctatttgtataacacaagataaaatcaaatcaaattgt 46945896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 49060479 - 49060552
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    ||||| ||||||||||||||| ||| || |||||||||||| ||||| | ||| |||||| |||| | ||||||    
T  49060479 ttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttatttt 49060552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 6824858 - 6824930
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    |||| ||||||||||||||| ||| |||||| || ||||| ||||||| || ||| |||||||| ||| ||||    
T  6824858 tatgtataagctatttctataacaaaagatagaacaaagttaaattgttttagtacaagttataagctgtttt 6824930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 27508126 - 27508162
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaag 131  Q
    |||||||||| |||||||| |||||||||||||||||    
T  27508126 ataagcacttgtgaataagttatttctattacacaag 27508162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 31341132 - 31341196
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttat 166  Q
    |||||| ||||||||||| ||| ||| ||||||||||||||| ||| ||  ||| ||||||||||    
T  31341132 cttatgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataagttat 31341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 36874106 - 36874058
Alignment:
Q  93 gcataagcacttatgaataagctatttctattacacaagataaaataaa 141  Q
    ||||||||||||||| ||||||||||||||| | | | |||||||||||    
T  36874106 gcataagcacttatgtataagctatttctataagaaatgataaaataaa 36874058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 43318655 - 43318611
Alignment:
Q  107 gaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||||| ||| | ||||||||||||| |||||||    
T  43318655 gaataagctatttctataacaaatgataaaataaagtcaaattgt 43318611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 34404968 - 34405026
Alignment:
Q  96 taagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatt 154  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  34404968 taagcacttatgaataagctgtttcttttacacaagataaaataaagtaaaattgtatt 34405026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 5122809 - 5122735
Alignment:
Q  268 aaagtcacattcttggcgtgtgttttccaaactctataaataatagcttctgaaaaatcacgtcaaaatgtgcct 342  Q
    |||||||| ||| || |||| |||||||||||||||||  ||  ||||||| |||||||||||||||||||||||    
T  5122809 aaagtcacgttcatgacgtgcgttttccaaactctatagttaccagcttcttaaaaatcacgtcaaaatgtgcct 5122735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 15942882 - 15942838
Alignment:
Q  99 gcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||| |||||||||||||||||| |||||||||||||||||    
T  15942882 gcacttatcaataagctatttctattatacaagataaaataaagt 15942838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 36151636 - 36151572
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||| |||||||||||| || ||| ||||||||||||||| ||||||| || ||||||||||||    
T  36151636 ttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttata 36151572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 34619510 - 34619443
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttatagg 169  Q
    |||||| |||||| |||||||| ||| |||||||||||| || ||||||| |||||||||| ||||||    
T  34619510 cttatgtataagccatttctataacaaaagataaaataaggttaaattgtttttgtataagctatagg 34619443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 35017502 - 35017553
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||| ||||||||||||||||||| ||| | |||||||||||||||||    
T  35017502 agcataagaacttatgaataagctatttttataatacaagataaaataaagt 35017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 4700206 - 4700157
Alignment:
Q  94 cataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||||| | ||||||||||||| ||| |||||||||||||||    
T  4700206 cataagcacttatgtacaagctatttctataacaaaagataaaataaagt 4700157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 51190826 - 51190870
Alignment:
Q  129 aagataaaataaagtaaaattgtatttgtataagttataggctat 173  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||    
T  51190826 aagataaaataaagttaaattgtttttgtataagttataagctat 51190870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 2831668 - 2831719
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||||||| ||| ||||||||||||||| || ||||||| |||||||||||    
T  2831668 agcataagcgcttgtgaataagctatttcaataacacaagctaaaataaagt 2831719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 4699744 - 4699685
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    |||||||||||||||||||||  ||||||||| ||||||||| ||| | | |||||||||    
T  4699744 cttatgaataagctatttctacaacacaagattaaataaagtcaaactatttttgtataa 4699685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 33527289 - 33527242
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaata 139  Q
    ||||||||| |||||||||||||||||||||  ||| |||||||||||    
T  33527289 agcataagcgcttatgaataagctatttctaaaacaaaagataaaata 33527242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 3924552 - 3924598
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaat 138  Q
    ||||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  3924552 agcataaacactaatgaaaaagctatttctataacacaagataaaat 3924598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 33186082 - 33186024
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||||||||||||||||| |||||||||||| ||  |||||| ||| || ||||||||    
T  33186082 ataagctatttctattacagaagataaaataaggtcgaattgtttttatacaagttata 33186024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 38578472 - 38578530
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||||||||||||| ||| ||||||| ||||||| ||||| | |||||||||| ||||    
T  38578472 ataagctatttctataacaaaagataacataaagttaaattatttttgtataagctata 38578530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 50319229 - 50319271
Alignment:
Q  101 acttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||    
T  50319229 acttatgtataagctatttctataacaaaagataaaataaagt 50319271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 567488 - 567533
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    ||||||| ||| |||||||||||||||| ||||||||||| |||||    
T  567488 tatgaattagccatttctattacacaaggtaaaataaagtcaaatt 567533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 4549804 - 4549853
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||| | ||||||||||||| ||| ||||||||||||||| |||||||    
T  4549804 cttatgtacaagctatttctataacaaaagataaaataaagttaaattgt 4549853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 17778898 - 17778943
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    |||||||| ||||||| |||||||| |||||||||||||| |||||    
T  17778898 tatgaatatgctatttatattacacgagataaaataaagtcaaatt 17778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 36495344 - 36495303
Alignment:
Q  109 ataagctatttctattaca-caagataaaataaagtaaaatt 149  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  36495344 ataagctatttctataacagcaagataaaataaagtaaaatt 36495303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 7028230 - 7028290
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    |||||| |||| ||||||||||  || ||||||||||||||| || |||| ||||||||||    
T  7028230 cttatgtataaactatttctatagcaaaagataaaataaagttaagttgtttttgtataag 7028290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 23370437 - 23370389
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||| ||||| | ||||||||||||||||||| ||||||||| |||||    
T  23370437 ataagtacttacgtataagctatttctattacaaaagataaaacaaagt 23370389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 37841929 - 37842001
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||| ||| ||| |||||||||| |||| ||| | ||||||||||||| ||||||| || ||||||| ||||    
T  37841929 ataagtactcatgtataagctattcctataacaaatgataaaataaagttaaattgttttcgtataagctata 37842001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 51359509 - 51359549
Alignment:
Q  127 acaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  51359509 acaagaaaagataaaataaaattgtatttgtataagttata 51359549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 52286609 - 52286657
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  52286609 ataagcgcttatgaataagatatttctacaacaaaagataaaataaagt 52286657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 34522198 - 34522147
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  34522198 agcataagcgcttatgaataagctatttctatgacacaagataaaataaagt 34522147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 926415 - 926483
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagt-aaaattgtatttgtat 159  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||    
T  926415 agcataagcgcatatgaataagctatttctataacacaagataaaataaagtcaaaactgtttttgtat 926483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 42597332 - 42597388
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  42597332 ataagtacttatgtataagctatttctataacaaaagataaaataaagtaaaattgt 42597388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 3537170 - 3537096
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttatagg 169  Q
    |||||||||| || |||||| ||||||||  || ||||||||||||||| ||||||| || ||||||| ||||||    
T  3537170 ataagcacttttgtataagcaatttctatagcaaaagataaaataaagtcaaattgttttcgtataagctatagg 3537096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 26215427 - 26215475
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| |||||| ||||||||||||||| ||| |||||||||||||||    
T  26215427 ataagcgcttatgtataagctatttctataacaaaagataaaataaagt 26215475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 34849043 - 34849145
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttgtggaaacttatg 203  Q
    |||||||||| ||||||| || |||||||||||||||||| | ||| | |||||||||| |||| |||  || ||| ||||| |||||| | ||||||||    
T  34849043 tatgaataagatatttcttttgcacaagataaaataaagtcacattatttttgtataagatataagct-gttatcataagctttcttgtag-aacttatg 34849140  T
Q  204 gaaat 208  Q
    |||||    
T  34849141 gaaat 34849145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 38537521 - 38537588
Alignment:
Q  93 gcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||||||||||||||||| | ||||| ||| |||||||||||||| |||| || |||| |||||||||    
T  38537521 gcataagcacttatgaataggatattt-tataacacaagataaaatgaagtcaatttgtttttgtataa 38537588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 7646145 - 7646203
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||| ||||||||||||||| | | ||| ||||||||||| ||||||| |||||||||    
T  7646145 ttatgtataagctatttctataagaaaaggtaaaataaagttaaattgtttttgtataa 7646203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 2482817 - 2482877
Alignment:
Q  115 tatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    ||||||||||| ||||||||||||||||| ||| ||| |||||||||| |||| ||| ||||    
T  2482817 tatttctatta-acaagataaaataaagtcaaaatgtttttgtataagctataagctgtttt 2482877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 6509410 - 6509361
Alignment:
Q  127 acaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    ||||||||||||||||| ||||||||||| |||||| |||| ||| ||||    
T  6509410 acaagataaaataaagtcaaattgtatttatataagctataagctgtttt 6509361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 14482140 - 14482189
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||| |||| |||||||||| ||| ||||||||||||||| |||||||    
T  14482140 cttatgtataaactatttctataacaaaagataaaataaagtcaaattgt 14482189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 42568746 - 42568800
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||  ||||||||||||||  ||| ||||||||||||||| |||||||    
T  42568746 ataagcacttat--ataagctatttctaaaacagaagataaaataaagtgaaattgt 42568800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 11841332 - 11841276
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||| || |||||| ||| ||||| ||||||||| ||| |||||||    
T  11841332 ataagcacttatgaacaaactatttatataacacatgataaaatagagtcaaattgt 11841276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 13561442 - 13561359
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatc 188  Q
    |||||||||||||||||||| ||| || || ||||||||| ||||||| ||  ||||| |||||  ||  |||||||||||||||    
T  13561442 tatgaataagctatttctataacagaaaattaaataaagtcaaattgttttcatataaattata-acttgttttcacaagctatc 13561359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 465885 - 465952
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    ||||||||||||  ||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||    
T  465885 ataagcacttatatataagctatttctatgacaaaagataaaataaagttaaattgtttttgtataag 465952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 18857531 - 18857473
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    |||||||||||||||||| || ||||| ||||||||||||| ||||||| ||| |||||    
T  18857531 ttatgaataagctatttcaataacacacgataaaataaagtcaaattgtttttctataa 18857473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 42569119 - 42569047
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    |||||| |||||||| |||||||||||||  || |||||||||||||||  |||||| || ||||||| ||||    
T  42569119 ataagcgcttatgaaaaagctatttctatagcaaaagataaaataaagtctaattgttttcgtataagctata 42569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 12407792 - 12407749
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaa 146  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||    
T  12407792 ttatgtataagctatttctataacaaaagataaaataaagtaaa 12407749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 12425536 - 12425597
Alignment:
Q  129 aagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    ||||||||||||||| ||||||| || ||||||| |||| |||  ||||||||||||||||||    
T  12425536 aagataaaataaagttaaattgttttcgtataagctataagct-gttttcacaagctatcttg 12425597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 912780 - 912731
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagt-aaaattgt 151  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||||||    
T  912780 ttatgaataagttatttctataacacaatataaaataaagtcaaaattgt 912731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 7096259 - 7096218
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  7096259 cttatgtataagctatttctataacaaaagataaaataaagt 7096218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 9106753 - 9106798
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaa 137  Q
    |||||||||| |||||||||||| |||||||| || ||||||||||    
T  9106753 agcataagcatttatgaataagcaatttctataacccaagataaaa 9106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 10363696 - 10363737
Alignment:
Q  110 taagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
T  10363696 taagctatttctataacaaaagataaaataaagttaaattgt 10363737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 11054114 - 11054167
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaa 145  Q
    ||||||| | |||||| ||||||||||||||| | | |||||||||||||||||    
T  11054114 agcataaacgcttatgtataagctatttctataataaaagataaaataaagtaa 11054167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 39128577 - 39128626
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||| |||||||| |||||| ||| ||||||||||||||| |||||||    
T  39128577 cttatgtataagctaattctataacaaaagataaaataaagtcaaattgt 39128626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 7674579 - 7674635
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||  |||||||||||||||  || ||||||||||||| | |||||||    
T  7674579 ataagcacttatatataagctatttctataccaaaagataaaataaatttaaattgt 7674635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 10125850 - 10125810
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  10125850 ttatgaataagctatttctatatcacaagataagataaagt 10125810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 30988216 - 30988188
Alignment:
Q  95 ataagcacttatgaataagctatttctat 123  Q
    |||||||||||||||||||||||||||||    
T  30988216 ataagcacttatgaataagctatttctat 30988188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 37112395 - 37112331
Alignment:
Q  97 aagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    |||| |||||| ||||||||||||||   || ||||||||| ||||| ||||||| |||||||||    
T  37112395 aagcgcttatgtataagctatttctacagcaaaagataaaacaaagttaaattgtttttgtataa 37112331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 33931709 - 33931628
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||| || | ||||| |||||||||| |||| ||| ||||    
T  33931709 ataagcgcttgtgaataagctatttctattacactagataaaataaggtcagattgtttttgtataagctataagctgtttt 33931628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 43259764 - 43259831
Alignment:
Q  94 cataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||| |||||| | ||||||||||||||| ||||||||||||||||||| |||| || |||||||||    
T  43259764 cataatcacttacggataagctatttctataacacaagataaaataaagtcaaatagtttttgtataa 43259831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 40808319 - 40808273
Alignment:
Q  115 tatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  40808319 tatttctattacacaagataaaataaagtcaaattgtttttgtataa 40808273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 7928433 - 7928377
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||||||||||||||||||||||| || |||||||||| || | |||||||    
T  7928433 ataagcacttatgaataagctatttctattgcaaaagataaaattaaatcaaattgt 7928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 43530250 - 43530202
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||    
T  43530250 ataagcacttatgaataagctatttctataggacaagataaaataaagt 43530202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 4090289 - 4090336
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||    
T  4090289 tatgaataagctatttccataacacaagataaaataaagtcaaattgt 4090336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 40401258 - 40401208
Alignment:
Q  95 ataagcacttatgaataagctattt--ctattacacaagataaaataaagt 143  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  40401258 ataagcacttatgaataagctatattcctattacacaagataaaataaagt 40401208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 43299539 - 43299476
Alignment:
Q  98 agcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||| ||| ||| |||||||||    
T  43299539 agcacttatgaattagctatttatataacagaagataaaataaagtcaaactgtttttgtataa 43299476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 787275 - 787325
Alignment:
Q  108 aataagctatttctattacacaagataaaataaagtaaaattgtatttgta 158  Q
    |||||||||||||||| ||||||||||||||||||| || |||| ||||||    
T  787275 aataagctatttctataacacaagataaaataaagtcaacttgtttttgta 787325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 3611164 - 3611252
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    |||||| ||||| |||||||||  || ||| ||||||||||| ||||||| ||||||||  |||||| ||  ||||||||||||||||||    
T  3611164 cttatgtataagttatttctatagcaaaaggtaaaataaagttaaattgtttttgtatagtttatagact-gttttcacaagctatcttg 3611252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 36114655 - 36114595
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    |||||| |||| ||| |||||| ||| ||||||||||||||| ||||||| ||||||||||    
T  36114655 cttatgcataacctagttctataacaaaagataaaataaagttaaattgtttttgtataag 36114595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 39567834 - 39567890
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||| || ||||| ||||||||| ||| ||||||||||||||| |||||||    
T  39567834 ataagcacttgtgtataagatatttctataacaaaagataaaataaagttaaattgt 39567890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 41880623 - 41880575
Alignment:
Q  114 ctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    |||||||||||||||| |||||||||||| |||||||| | ||||||||    
T  41880623 ctatttctattacacacgataaaataaagcaaaattgtttctgtataag 41880575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 28039474 - 28039423
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||||||| | ||||||||||||||||   |||||||||||||||||||||    
T  28039474 agcataagcgcatatgaataagctattttggttacacaagataaaataaagt 28039423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 5133710 - 5133784
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    |||||| ||||||||||||||| ||| ||||||||||||||  ||| ||| ||| |||||| |||| ||| ||||    
T  5133710 cttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgtttt 5133784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 12464578 - 12464517
Alignment:
Q  129 aagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    ||||||||||||||| ||||||| |||||||| | |||| |||| |||||| |||||||||||    
T  12464578 aagataaaataaagttaaattgtttttgtatatgctataagcta-ttttcataagctatcttg 12464517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 6887400 - 6887354
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| |||||||||||||||||||||  ||||||||||| |||||||    
T  6887400 ataagcgcttatgaataagctatttcta--acacaagataagataaagt 6887354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 32837242 - 32837287
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataa 140  Q
    ||||||||||||| |||| |||||||||| ||| ||||||||||||    
T  32837242 ataagcacttatgcataatctatttctataacaaaagataaaataa 32837287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 39621891 - 39621932
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||| ||||||||| |||||| ||||||||||||    
T  39621891 cttatgaataagatatttctataacacaaaataaaataaagt 39621932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 40758968 - 40759017
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgta 158  Q
    |||||||||||| || ||| ||||||||||||||| ||||||| ||||||    
T  40758968 ataagctatttccataacaaaagataaaataaagtcaaattgtttttgta 40759017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 44786543 - 44786474
Alignment:
Q  96 taagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagtta 165  Q
    |||||||||||| ||||||||||||||  |   |||||||||| |||| |||||||  ||||||||||||    
T  44786543 taagcacttatgtataagctatttctacaattaaagataaaattaagttaaattgttgttgtataagtta 44786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 626342 - 626306
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaata 139  Q
    ||||||||||||||||||||  |||||||||||||||    
T  626342 ttatgaataagctatttctagaacacaagataaaata 626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 31461383 - 31461423
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    ||||||||||||||| ||| ||||||||||||||| |||||    
T  31461383 ataagctatttctataacaaaagataaaataaagtcaaatt 31461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 33941876 - 33941912
Alignment:
Q  131 gataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  33941876 gataaaacaaagtaaaattgtttttgtataagttata 33941912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 40842460 - 40842420
Alignment:
Q  111 aagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||||| |||||||| |||||| |||||||    
T  40842460 aagctatttctattacaaaagataaattaaagtcaaattgt 40842420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 41407023 - 41407071
Alignment:
Q  112 agctatttctattacacaagataaaataaagtaaaattgtatttgtata 160  Q
    |||||||||||| ||||||||||||||||||| ||| ||  ||||||||    
T  41407023 agctatttctataacacaagataaaataaagttaaactgcttttgtata 41407071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 42907290 - 42907346
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||||   ||||||||||||||| ||| |||| |||||||||| |||||||    
T  42907290 ataagcacttacatataagctatttctataacagaagaaaaaataaagttaaattgt 42907346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 17884014 - 17884070
Alignment:
Q  110 taagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttat 166  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||    
T  17884014 taagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttat 17884070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 52170116 - 52170053
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    |||||||||||||||| |||||| || ||||||||||||| ||||||||||  |||||||||||    
T  52170116 tatgaataagctatttttattactcatgataaaataaagttaaattgtattcatataagttata 52170053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 6364080 - 6364134
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||    
T  6364080 ataagcacttatgtataagctatttctataacaaaagataaaataaagtgaaatt 6364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 42121427 - 42121472
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaatt 149  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  42121427 tatgaataagctatttctattacactagataaaataaaataaaatt 42121472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 53422290 - 53422339
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaa 141  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||    
T  53422290 agcataagctcttatgaataagctatttctacaacacaagataaaataaa 53422339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 30024631 - 30024687
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||| ||||||| ||||| ||||||||| ||| |||||||||||||||||||||||    
T  30024631 ataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgt 30024687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 26520368 - 26520286
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctattttt 177  Q
    ||||||||||||| |||| || ||||||| ||| ||||| ||||||||| ||||||| || || |||| |||| |||||||||    
T  26520368 ataagcacttatgtataaactgtttctataacaaaagatgaaataaagttaaattgttttcgtgtaagctataagctattttt 26520286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 2996511 - 2996576
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||||||||||||| ||| || ||| ||||||||||| ||| ||||||| ||| |||||||||||    
T  2996511 cttatgaataagctacttcgataacataagataaaatacagtcaaattgtttttatataagttata 2996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 38478680 - 38478721
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||||||||||||| ||||||||||| |||||||    
T  38478680 cttatgaataagctatttctataacacaagataagataaagt 38478721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 56480284 - 56480360
Alignment:
Q  100 cacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    |||||| | |||||||||||| || ||| |||| |||||||||| ||||||| | ||||||||||||| ||| ||||    
T  56480284 cacttacgtataagctatttccataacaaaagacaaaataaagttaaattgtttatgtataagttataagctgtttt 56480360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 3155534 - 3155597
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgta 158  Q
    |||||||  |||| |||||||||||||||  || ||||||||||||||| ||||||| ||||||    
T  3155534 ataagcatgtatgtataagctatttctatagcaaaagataaaataaagttaaattgtttttgta 3155597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 7601690 - 7601761
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttat 166  Q
    |||||| |||||| |||||||||| ||||  || | ||||||||||||| ||||||| |||||||| |||||    
T  7601690 ataagcgcttatgtataagctattcctatagcaaaggataaaataaagttaaattgtttttgtatatgttat 7601761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 21470023 - 21469956
Alignment:
Q  94 cataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||||| |||||||||||||||||| | | ||||||||||||||  ||| ||||||| || ||||||    
T  21470023 cataagcgcttatgaataagctatttatgtgacacaagataaaattgagtcaaattgttttcgtataa 21469956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 54325162 - 54325095
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    |||| |||||||||||||| ||||||||||||||| ||| ||| ||  |||||| |||| ||||||||    
T  54325162 ataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctatttt 54325095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 45104546 - 45104480
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    |||||||||| ||||||||||||||| |  ||||| ||||||||||||| || |||| ||| |||||    
T  45104546 ataagcacttgtgaataagctatttcgacgacacatgataaaataaagtcaacttgtttttatataa 45104480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 6466184 - 6466119
Alignment:
Q  96 taagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||| |||||||||||| | ||| ||| ||||||||| ||||||||| ||||| | |||||||||    
T  6466184 taagcgcttatgaataagttgtttatataacacaagatcaaataaagtgaaattctttttgtataa 6466119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 35290292 - 35290232
Alignment:
Q  129 aagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatctt 190  Q
    ||||||||||||||| ||||||||||  ||||||||| | ||| ||||||| ||||||||||    
T  35290292 aagataaaataaagttaaattgtattcatataagttagaagct-tttttcataagctatctt 35290232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 39438660 - 39438619
Alignment:
Q  110 taagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
T  39438660 taagctatttctataacataagataaaataaagtcaaattgt 39438619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 55084613 - 55084544
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagtt 164  Q
    |||||| |||||| ||||||||||||| | ||| |||||||||  |||| ||||||| ||||| ||||||    
T  55084613 ataagcgcttatgcataagctatttctttgacagaagataaaagcaagttaaattgtttttgtttaagtt 55084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 17223164 - 17223116
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||||||||| |||  ||||||||||| ||||||| |||||||||||    
T  17223164 ataagcacttattaattcgctatttctataacacaaggtaaaataaagt 17223116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 42322010 - 42321962
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    ||||||||||||||||| ||| ||| | ||||||||||||| |||||||    
T  42322010 ttatgaataagctatttttataacaaatgataaaataaagtcaaattgt 42321962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 51044590 - 51044550
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  51044590 ttatgtataagctatttctataacaaaagataaaataaagt 51044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 51630058 - 51630137
Alignment:
Q  111 aagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttttcacaagctatcttg 191  Q
    ||||||||| |||  || ||||||||||||||| ||||||| ||  |||||| |||| |||| |||||| |||||||||||    
T  51630058 aagctatttatatagcaaaagataaaataaagttaaattgttttgatataagctataagcta-ttttcataagctatcttg 51630137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 33080724 - 33080657
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtat 159  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||| | |||| ||||||| |||||||    
T  33080724 agcataagcacttatgaataagctttttctataacacaggataaattcaagtcaaattgtttttgtat 33080657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 9093695 - 9093614
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    |||||| |||||| |||||||||||||||  || ||||||||||||||| ||||||| || ||||||| |||| ||| ||||    
T  9093695 ataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgtttt 9093614  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 34611804 - 34611884
Alignment:
Q  96 taagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctatttt 176  Q
    ||||| ||||| ||||| ||||||||||||  |||||||||||||||| ||||||| ||  |||||| |||||||| ||||    
T  34611804 taagctcttattaataaactatttctattatgcaagataaaataaagttaaattgttttcttataagctataggctgtttt 34611884  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 33736772 - 33736849
Alignment:
Q  98 agcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctattt 175  Q
    |||||||||| ||||| ||||||||| ||| || |||||||||||| ||||||  || |||| ||||||| |||||||    
T  33736772 agcacttatgtataagttatttctataacataacataaaataaagttaaattgccttcgtatcagttataagctattt 33736849  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 415244 - 415307
Alignment:
Q  104 tatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    |||||||||| |||||||||||| | |||||||| ||||| ||||||| || ||||||| ||||    
T  415244 tatgaataagttatttctattacgcgagataaaacaaagttaaattgttttcgtataagctata 415307  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 4006642 - 4006717
Alignment:
Q  92 agcataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttata 167  Q
    ||||||||  |||||| ||||| ||||||||| ||| | ||||||||||||| ||||||| ||| |||||| ||||    
T  4006642 agcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctata 4006717  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 31776402 - 31776348
Alignment:
Q  106 tgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||| |||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  31776402 tgaatgagctatttctataacacaa-ataaaataaagtcaaattgtttttgtataa 31776348  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 24836330 - 24836272
Alignment:
Q  103 ttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||| ||||| ||||||||| ||| ||||||||||||||| ||||||| || ||||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataa 24836272  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 32206159 - 32206081
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctat 173  Q
    |||||||||||||  |||||||| ||||| ||| ||||| ||||||||| ||||| | || ||||||| |||| |||||    
T  32206159 ataagcacttatgtgtaagctatctctatgacaaaagatgaaataaagttaaattattttagtataagctataagctat 32206081  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 29274361 - 29274312
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||| |||||||||||||||  || ||||||||||||||| |||||||    
T  29274361 cttatgtataagctatttctatagcaaaagataaaataaagtcaaattgt 29274312  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 507158 - 507218
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    |||||| ||||  ||||||||| ||| ||||||||||||||| | ||||| ||||||||||    
T  507158 cttatgtataaattatttctataacaaaagataaaataaagttagattgtttttgtataag 507218  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 781316 - 781368
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaa 147  Q
    ||||| ||| ||| ||||||||||||||| | | |||||||||||||||||||    
T  781316 ataagtactaatgtataagctatttctataataaaagataaaataaagtaaaa 781368  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 2735014 - 2735066
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    ||||||||| ||||| ||| ||||||||||||||| ||||| | |||||||||    
T  2735014 ataagctatgtctataacaaaagataaaataaagttaaattatttttgtataa 2735066  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 4248903 - 4248955
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataa 161  Q
    |||||||||||| || ||| ||||||||||||||| ||||||  |||||||||    
T  4248903 ataagctatttcaataacaaaagataaaataaagtcaaattgattttgtataa 4248955  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 10657182 - 10657230
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagt 143  Q
    ||||||||||| |||||||||| |||||| | || ||||||||||||||    
T  10657182 ataagcacttacgaataagctacttctataagacgagataaaataaagt 10657230  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 22742311 - 22742379
Alignment:
Q  109 ataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggctattttt 177  Q
    ||||||||||| ||| ||| | ||||||||||||| ||||||| ||  |||||| |||| |||||||||    
T  22742311 ataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctataagctattttt 22742379  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 24782003 - 24782067
Alignment:
Q  108 aataagctatttctattacacaagataaaataaagtaaaattgtatttgtataagttataggcta 172  Q
    |||||||||||||||| ||| |||||||||| || | ||||||| ||  ||||||||||| ||||    
T  24782003 aataagctatttctataacaaaagataaaatcaaatcaaattgttttcatataagttataagcta 24782067  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 32386231 - 32386171
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    |||||| ||||||||||||  ||| | ||||||||||||||||||| ||| ||| ||||||    
T  32386231 cttatgtataagctatttcacttagaaaagataaaataaagtaaaactgtttttatataag 32386171  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 143200 - 143155
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataa 140  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||    
T  143200 ataagcgcttatgaattagctatttctataacacaagataaaataa 143155  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 21417 - 21350
Alignment:
Q  95 ataagcacttatgaataagctatttctattacacaagataaaataaagtaaaattgtatttgtataag 162  Q
    ||||||||||||| ||||||||||| |||   | ||||||||||||||| ||||||| || |||||||    
T  21417 ataagcacttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataag 21350  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 27514 - 27563
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagtaaaattgt 151  Q
    |||||| ||||| ||||||||| ||| ||||||||||||||| |||||||    
T  27514 cttatgtataagttatttctataacagaagataaaataaagtcaaattgt 27563  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 1206 - 1165
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  1206 cttatgtataagctatttctataacaaaagataaaataaagt 1165  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 2769 - 2810
Alignment:
Q  102 cttatgaataagctatttctattacacaagataaaataaagt 143  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  2769 cttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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