View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5245-Insertion-9 (Length: 413)

Name: NF5245-Insertion-9
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5245-Insertion-9
NF5245-Insertion-9
[»] chr3 (5 HSPs)
chr3 (11-247)||(8103300-8103535)
chr3 (256-413)||(8103097-8103254)
chr3 (19-246)||(40146457-40146683)
chr3 (34-201)||(40409463-40409629)
chr3 (259-353)||(40146733-40146827)
[»] chr4 (7 HSPs)
chr4 (256-405)||(7655481-7655630)
chr4 (170-231)||(7616072-7616133)
chr4 (258-411)||(7629244-7629397)
chr4 (170-222)||(7637916-7637968)
chr4 (263-350)||(39075923-39076010)
chr4 (256-350)||(7399154-7399248)
chr4 (170-231)||(7629461-7629522)
[»] scaffold0190 (1 HSPs)
scaffold0190 (256-395)||(5071-5210)
[»] chr6 (3 HSPs)
chr6 (256-331)||(6501210-6501285)
chr6 (256-332)||(11969610-11969686)
chr6 (165-206)||(6501372-6501413)
[»] chr8 (1 HSPs)
chr8 (256-327)||(34174825-34174896)
[»] chr7 (2 HSPs)
chr7 (258-328)||(8934503-8934573)
chr7 (258-328)||(8935444-8935514)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 8103535 - 8103300
Alignment:
Q  11 ccacccataagggtctcctttaccaccatcctcttgagtccaaccaaattcgacagctaaaacaatctctatcatctactcttgcctttttcccactact 110  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8103535 ccacccataagggtctcctttaccaccatcctctagagtcaaaccaaattccacagctaaaacaatctctatcatctactcttgcttttttcccactact 8103436  T
Q  111 tgcaggccgtttagaaataacagaccatgaagacaacaccatgtcgtgtacctgtcacgtgcaacaatgctggtgtactctttgtccatgctgcaactga 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  8103435 tgcaggccgtctagaaataacagaccatgaagacaacaccatgtcgtgt-tcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactga 8103337  T
Q  211 gaacacttgtgtaggtgacatacttggatgcacctat 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  8103336 gaacacttgtgtaggtgacatacttggatgcacctat 8103300  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 8103254 - 8103097
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgttgatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  8103254 aactacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 8103155  T
Q  356 gaactttggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttg 413  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8103154 gaacttcggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttg 8103097  T

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Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 40146457 - 40146683
Alignment:
Q  19 aagggtctcctttaccaccatcctcttgagtccaaccaaattcgacagctaaaacaatctctatcatctactcttgcctttttcccactacttgcaggcc 118  Q
    |||||||| ||||| ||||||||||| | | | |||||||||| ||| || ||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  40146457 aagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggcc 40146556  T
Q  119 gtttagaaataacagaccatgaagacaacaccatgtcgtgtacctgtcacgtgcaacaatgctggtgtactctttgtccatgctgcaactgagaacactt 218  Q
    || ||||||||||||| ||  | ||||||||| | || ||| || ||||| ||||||||||| || |  |||||||||||||||||  | ||||||||||    
T  40146557 gtctagaaataacagatcacaaggacaacaccgtttcatgttcc-gtcacatgcaacaatgcaggcgcgctctttgtccatgctgcggcagagaacactt 40146655  T
Q  219 gtgtaggtgacatacttggatgcaccta 246  Q
    ||||||||||||||||||||||||||||    
T  40146656 gtgtaggtgacatacttggatgcaccta 40146683  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 40409463 - 40409629
Alignment:
Q  34 caccatcctcttgagtccaaccaaattcgacagctaaaacaatctctatcatctactcttgcctttttcccactacttgcaggccgtttagaaataacag 133  Q
    ||||||||||| | | | |||||||||| ||| || ||||| |||||||| ||| | |||||||||||||||| ||||||||||||| |||| | |||||    
T  40409463 caccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcctctgcccttgcctttttcccaccacttgcaggccgtctagagagaacag 40409562  T
Q  134 accatgaagacaacaccatgtcgtgtacctgtcacgtgcaacaatgctggtgtactctttgtccatgc 201  Q
    ||||| ||||||||||||| ||||||   |||||| ||||||||||| ||||  |||||||| |||||    
T  40409563 accataaagacaacaccatttcgtgt-tgtgtcacatgcaacaatgcaggtgcgctctttgtgcatgc 40409629  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 40146733 - 40146827
Alignment:
Q  259 tacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgttga 353  Q
    |||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||||||||||| ||||||| || || ||||||    
T  40146733 tacgaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttga 40146827  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 405
Target Start/End: Original strand, 7655481 - 7655630
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgttgatg 355  Q
    |||||||||||||||||| |||||||||| || || ||||| || ||| |||||||||||||||| ||||| |||| ||| |||| ||| |  | ||| |    
T  7655481 aactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacg 7655580  T
Q  356 gaactttggcatggtatttcattaattcgtgggctgaaatttcacgtggt 405  Q
    ||   |   | ||| ||||||| ||||||||||||||||| |||||||||    
T  7655581 gacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggt 7655630  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7616133 - 7616072
Alignment:
Q  170 tgcaacaatgctggtgtactctttgtccatgctgcaactgagaacacttgtgtaggtgacat 231  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||| |||||||| | ||||||    
T  7616133 tgcaacaatgcaggtgtactctttatccatgctgcagctgagaatacttgtgttgctgacat 7616072  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 411
Target Start/End: Complemental strand, 7629397 - 7629244
Alignment:
Q  258 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgttgatgga 357  Q
    |||||||||||| ||| |||||||||| || || ||||| || ||| ||||||||||  ||||||||||||  || || |||| ||| | |||||| |||    
T  7629397 ctacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacgga 7629298  T
Q  358 actttggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgt 411  Q
    |  |  |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    
T  7629297 aagtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgt 7629244  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 7637968 - 7637916
Alignment:
Q  170 tgcaacaatgctggtgtactctttgtccatgctgcaactgagaacacttgtgt 222  Q
    ||||||||||| |||||||||||||||||||| ||| | ||||| ||||||||    
T  7637968 tgcaacaatgcaggtgtactctttgtccatgccgcagcagagaatacttgtgt 7637916  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 350
Target Start/End: Complemental strand, 39076010 - 39075923
Alignment:
Q  263 aaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgt 350  Q
    |||||||||||||||||||  |||| || ||||| ||||||||| | || || ||||| ||||||||| |  |||||| |||||||||    
T  39076010 aaggcacatcacaaccattacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttgcaattaaccatgtgggtgt 39075923  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 7399248 - 7399154
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgt 350  Q
    ||||||||||| |||||||||||| |  |||| || ||||| ||||||||| | || || ||||| |||||||||||  |||||| |||| ||||    
T  7399248 aactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttacaattaaccatgtgtgtgt 7399154  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 7629522 - 7629461
Alignment:
Q  170 tgcaacaatgctggtgtactctttgtccatgctgcaactgagaacacttgtgtaggtgacat 231  Q
    ||||||||||| |||||||||||| |||| |||||| | ||||| |||||||| | ||||||    
T  7629522 tgcaacaatgcaggtgtactctttatccacgctgcagccgagaatacttgtgttgctgacat 7629461  T

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Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 395
Target Start/End: Complemental strand, 5210 - 5071
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccgtgtgggtgttgatg 355  Q
    ||||||||||| ||||||||||||||  ||||  | ||||| || |||||||||||||||||||| ||||| || ||  ||||||  |||  ||||||||    
T  5210 aactacgaaggaacatcacaaccattacttgcaatccaagtaacggagttagttgacggcatcttcattggcttcacagttaaccacgtgattgttgatg 5111  T
Q  356 gaactttggcatggtatttcattaattcgtgggctgaaat 395  Q
    | || | |   ||| ||||||| |||||||||||||||||    
T  5110 gtacgtcgttttggcatttcatcaattcgtgggctgaaat 5071  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 6501285 - 6501210
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggtttta 331  Q
    ||||||||||||| |||| |||||||| |||| |||||||| ||||||||||||| |||  |||||||||| ||||    
T  6501285 aactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggttta 6501210  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 11969686 - 11969610
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttac 332  Q
    ||||| ||||| |||||| | |||||| |||| || ||||| |||||||||||||| |||||||| ||||| |||||    
T  11969686 aactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggctttac 11969610  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 6501413 - 6501372
Alignment:
Q  165 tcacgtgcaacaatgctggtgtactctttgtccatgctgcaa 206  Q
    |||| ||||||||||| ||||||||||||||||| |||||||    
T  6501413 tcacatgcaacaatgcaggtgtactctttgtccacgctgcaa 6501372  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 34174896 - 34174825
Alignment:
Q  256 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggt 327  Q
    |||||| |||| ||||||||||||||| |||| || ||||| ||||||||| |||| || ||||| ||||||    
T  34174896 aactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 34174825  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 8934503 - 8934573
Alignment:
Q  258 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggtt 328  Q
    |||||||||||||||| |||||||||| || || ||||| || |||||| ||||||| || || |||||||    
T  8934503 ctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggtt 8934573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 8935444 - 8935514
Alignment:
Q  258 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggtt 328  Q
    |||||||||||||||| |||||||||| || || ||||| || |||||| ||||||| || || |||||||    
T  8935444 ctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggtt 8935514  T

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