View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245_high_1 (Length: 635)
Name: NF5245_high_1
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 11 - 618
Target Start/End: Original strand, 5680396 - 5681006
Alignment:
| Q |
11 |
gtagcatagggcggatgagtagtag---ctcatgagtgattttgttcaaagactgtatggataatagttgaggagttctttagtatctaatagtgtatgg |
107 |
Q |
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| T |
5680396 |
gtagtatagggcggatgagtagtagtagctcatgagtcattttgttcaaagactgtatggataatagttgaggagttctttagtatctaatagtgtatgg |
5680495 |
T |
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| Q |
108 |
tttgtttggttaatcaaacaaatcatacaatattcggtacctcctgaacttcgaaattcatattcatgtagtcgtggagtgagaaagctcataaactatc |
207 |
Q |
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| T |
5680496 |
tttgtttggttaatcaaacaaatcatacaatattcggtacctcctgaacttcgaaattcatattcatgtagtcgtggagtgagaaagctcataaactatc |
5680595 |
T |
|
| Q |
208 |
acataggttccctcttcgactaatcttatgctctattttgcgaaattgataatttccttcaaaatgaactgtagcgtgatccattggagcgatctcnnnn |
307 |
Q |
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| T |
5680596 |
atataggttccctcttcaactaatcttatgccctattttacgaaattgataatttcctttaaaatgaactgtagcgtgatccattggagcgatctctttt |
5680695 |
T |
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| Q |
308 |
nnngtattgtcaaataacattttattttcagcaaaatggacaaattttaccacaactttattgttacatgaaagatgtttgtttggtacc-tcattctat |
406 |
Q |
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| T |
5680696 |
ttt-tattgtcaaataacattttattttcagcaaaatggacaaattttaccacaactttattgttacatgaaagatgtttgtttggtaccctcattctat |
5680794 |
T |
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| Q |
407 |
cgttaaaccttttgggcttggagttttagagtattgttaacattatttggcacaaagtcttgtaaatcattgaccaactcatcaaggtagccatgatctt |
506 |
Q |
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| T |
5680795 |
cgttaaaccttttgggcttggagttttagagtattgttaacattatttggcacaaagtcttgtaaatcattgaccaactcatcaaggtagccatgatatt |
5680894 |
T |
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| Q |
507 |
tatagaatccaaggtgttatgatacgagcaaagcaagaataccacataagcaaagttacgttgccctactcttttattttttgaaattttcatattctcg |
606 |
Q |
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| T |
5680895 |
tatagaatccaaggtgttatgatacgagcaaagcaagaataccacataagcaaagttacgttgccctactcttttattttttgaaattttcatattctcg |
5680994 |
T |
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| Q |
607 |
tacttatatcat |
618 |
Q |
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| T |
5680995 |
tacttatatcat |
5681006 |
T |
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