View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5245_high_11 (Length: 231)
Name: NF5245_high_11
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 6366561 - 6366460
Alignment:
| Q |
17 |
agaacagaataataaaccatgaaaacctacactacagtctccttttcactttcttttcagccacaaaagcatgattttattgcaatttagtccctaaact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
6366561 |
agaacagaataataaaccatgaaaacctacactacaatctccttttcactttcttttcagccacaatagcatgattttattgcaatttagtccctatact |
6366462 |
T |
|
| Q |
117 |
at |
118 |
Q |
| |
|
|| |
|
|
| T |
6366461 |
at |
6366460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 6366390 - 6366304
Alignment:
| Q |
133 |
attgagtggttattcataaaacaaatatgaacataaataatgtgacaggttctaagccattatttaaaaacaagcatatgtatatat |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6366390 |
attgagtggttattcacaaaacaaatatgaacataaataatgtgacaggttctaagccattatttaaaaacaagcatatgtatatat |
6366304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 6366448 - 6366413
Alignment:
| Q |
99 |
caatttagtccctaaactattctcctatacaactat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6366448 |
caatttagtccctaaactattctcctatccaactat |
6366413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 6347456 - 6347418
Alignment:
| Q |
24 |
aataataaaccatgaaaacctacactacagtctcctttt |
62 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
6347456 |
aataataaaccaagaaaacctacactacaatctcctttt |
6347418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 6357268 - 6357215
Alignment:
| Q |
22 |
agaataataaaccatgaaaacctacactacagtctcc-ttttcactttcttttc |
74 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||| ||||||||| |||||| |
|
|
| T |
6357268 |
agaataataaaccaagaaaacctacgctacaatctcctttttcacttccttttc |
6357215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University