View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245_high_2 (Length: 346)
Name: NF5245_high_2
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245_high_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 5918637 - 5918965
Alignment:
| Q |
18 |
ataaggatggtaaaaatgagattttgattagaaatggtgtttcaagtgaaagctactttacaaatttggcactaaaaagtggtgaaaagttgcatacttg |
117 |
Q |
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| T |
5918637 |
ataaggatggtaaaaatgagattttgattagaaatggtgtttcaagtgaaagctactttacaaatttggcactaaaaagtggtgaaaagttgcatacttg |
5918736 |
T |
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| Q |
118 |
gattgattatgaagcaagttcaagaaggctagaagtgagattgagtaaacatggaaattcaaagccattggatccattgttatggcacagaattgacata |
217 |
Q |
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| T |
5918737 |
gattgattatgaagcaagttcaagaaggttagaagtgagattgagtaaacatggaaattcaaagccattggatccattgttatggcacaaaattgacata |
5918836 |
T |
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| Q |
218 |
tctaatgtcttgaaggaggaagaaatgtttgttggttttagtcatgtgaaggggaataatgcttttctatattcatggagctttgttatgaggaattttc |
317 |
Q |
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| T |
5918837 |
tctaatgtcttgaaggaggaagaaatgtttgttggttttagtcatgtgaaggggaataatgcttttctatattcatggagctttgttatgaggaattttc |
5918936 |
T |
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| Q |
318 |
caccacattcaatgcattcagagccactt |
346 |
Q |
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| T |
5918937 |
caccacattcaatgcattcagagccactt |
5918965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 162 - 346
Target Start/End: Complemental strand, 3028755 - 3028571
Alignment:
| Q |
162 |
gtaaacatggaaattcaaagccattggatccattgttatggcacagaattgacatatctaatgtcttgaaggaggaagaaatgtttgttggttttagtca |
261 |
Q |
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| T |
3028755 |
gtaaaaatggaaattcaaagccattgaatttattgttatggcataaaattgacgtctctaatgtcttgaaggatgaagaaatgtttgttggttttagtca |
3028656 |
T |
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| Q |
262 |
tgtgaaggggaataatg-cttttctatattcatggagctttgttatgaggaattttccaccacattcaatgcattcagagccactt |
346 |
Q |
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| T |
3028655 |
tgtgaagggg-acaatgttttttttgtattcgtggagctttgttataaggcattttccaccacattcaatgcattcagagccactt |
3028571 |
T |
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