View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245_high_6 (Length: 261)
Name: NF5245_high_6
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 3045941 - 3046165
Alignment:
| Q |
20 |
tgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgtttacttattttaggtcaagtaatcgtgtaatgg |
119 |
Q |
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| T |
3045941 |
tgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgtttacttattttaggtcaagtaattgtgtaatgg |
3046040 |
T |
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| Q |
120 |
ttaaaaattcatattttaagttggggtgtgcacgatttgaaccctaactcttgtatatatttaacttcttaattagtgctttagatgcacttattagtta |
219 |
Q |
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| T |
3046041 |
ttagaaattcatattttaaggtggggtgtgcacgattcgaaccctaactcttgtatatatttaacttcttaaccagtgccttaaatgcatttattagcta |
3046140 |
T |
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| Q |
220 |
actctattatgtaatgttcatatca |
244 |
Q |
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||||||||||||||||||||||||| |
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| T |
3046141 |
actctattatgtaatgttcatatca |
3046165 |
T |
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