View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245_low_3 (Length: 327)
Name: NF5245_low_3
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 2943547 - 2943841
Alignment:
| Q |
20 |
gaacactgttcaggagcaatttttgatcatgaagccaaatgaggttacaacccgatcattcaaaatttacccaagcaccgaccaagcttccaaatattcc |
119 |
Q |
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| T |
2943547 |
gaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattcaaaatttacccaagcaccgaccaagcttccaaatattcc |
2943646 |
T |
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| Q |
120 |
tgtgcaggtaaagttgaagcttaatatattcttatttctgacgtgtatacagaaaatgttgatgtttatattatgagtannnnnnnnggtgttgttaatg |
219 |
Q |
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| T |
2943647 |
tgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgtttatattatgagtattttttttggtgttgttaatg |
2943746 |
T |
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| Q |
220 |
aagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcaatttactaccactggaactgttcttgacaatggaacacaggtt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943747 |
aagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcagtttactaccactggaactgttcttgacaatggaacacaggtt |
2943841 |
T |
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