View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5245_low_7 (Length: 257)
Name: NF5245_low_7
Description: NF5245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5245_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 35331399 - 35331620
Alignment:
| Q |
7 |
aaaaatggggaagcaattctccctcaagtaaataatatttagttttagtacatttataacagaagatattagttcaattaaaacataattaacgatcatg |
106 |
Q |
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| T |
35331399 |
aaaaatggggaagcaattctccctcaagtaaataatatttaattttagtacatttataacagaaaatattagttcaattata-------------tcacg |
35331485 |
T |
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| Q |
107 |
tactctataaaatgagcataattaactctcaagtatttatcacacttatcttcccatcatgcagaacaaagtctccgtacttatagattagattttgaaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
35331486 |
tactctataaaatgagcataattaactctcaagtatttatcacacttatcttcccatcatgcagaacaaagtctccgaactcatagatcagattttgaaa |
35331585 |
T |
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| Q |
207 |
tagaaaaaggatataatagaattaaaacaaccata |
241 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35331586 |
tagaaaaaggatataatagaattaaaacaaccata |
35331620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 44969630 - 44969851
Alignment:
| Q |
7 |
aaaaatggggaagcaattctccctcaagtaaataatatttagttttagtacatttataacagaagatattagttcaattaaaacataattaacgatcatg |
106 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||| | |
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| T |
44969630 |
aaaaatggggaagcaattctacctcaagtaaataatatttaattttagtacatttataacagaaaatattagttcaattata-------------tcacg |
44969716 |
T |
|
| Q |
107 |
tactctataaaatgagcataattaactctcaagtatttatcacacttatcttcccatcatgcagaacaaagtctccgtacttatagattagattttgaaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||| |
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| T |
44969717 |
tactctataaaatgagcataattaactctcaagtatttatcacacttatcttcccatcatgtagaacaaagtctccgaactcatagatcagattttgaaa |
44969816 |
T |
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| Q |
207 |
tagaaaaaggatataatagaattaaaacaaccata |
241 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44969817 |
tagaaaaaggatataatagaattaaaacaaccata |
44969851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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