View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246-Insertion-2 (Length: 540)
Name: NF5246-Insertion-2
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Complemental strand, 42837579 - 42837047
Alignment:
| Q |
8 |
agtataattttgatcatcctggtatggtaattaagatttactatgcgcgaaaaatggcagttatgtgtgatctggattaaattaaatcttttggtttttg |
107 |
Q |
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| T |
42837579 |
agtataattttgatcatcctggtatggtaattaagatttactatgcgcgaaaaatggcagttatgtgtgatctggattaaattaaatcttttggtttttg |
42837480 |
T |
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| Q |
108 |
ttagatgcatttgatacagaacaacttgtagaaacactcatcaaacttaaatctggacagtcagttcaggttcctgtttatgatttcaagctccaccaaa |
207 |
Q |
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| T |
42837479 |
ttagatgcatttgatacagaacaacttgtagaaacactcatcaaacttaaatctggacagtcagttcaggttcctgtttatgatttcaagctccaccaaa |
42837380 |
T |
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| Q |
208 |
gagcttctgatagataccgacaggtaggtacctttctgataggttcaaagtaggtgtggtgttagtatcagttgttatcgaatttgttgccatgtttaaa |
307 |
Q |
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| T |
42837379 |
gagcttctgatagataccgacaggtaggtacctttctgataggttcaaagtaggtgtggtgttagtatcagttgttatcgaatttgttgccatgtttaaa |
42837280 |
T |
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| Q |
308 |
tcttatcaattatgcaagtaaatagataatctgtcatcgcaagagccattggtagatagtattttctcataccctttaattgtatacctgtccatgtaaa |
407 |
Q |
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| T |
42837279 |
tcttatcaattatgcaagtaaatagataatctgtcatcgcaagagccattggtagatagtattttctcataccctttaattgtatacctgtccatgtaaa |
42837180 |
T |
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| Q |
408 |
tgtatctatctaagcatatatacctgatttgatttatacctgtctactttgaagaagagatgacataggcacatagatttctgattcagcctagctggct |
507 |
Q |
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| T |
42837179 |
tgtatctatctaagcatatatacctgatttgatttgtacctgtctactttgaagaagagatgacataggcacatagatttctgattcagcctagctggct |
42837080 |
T |
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| Q |
508 |
gttttaaaagaatttatatcttttcattttcct |
540 |
Q |
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| T |
42837079 |
gttttaaaaggatttatatcttttcattttcct |
42837047 |
T |
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