View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5246-Insertion-3 (Length: 418)
Name: NF5246-Insertion-3
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 14870342 - 14869932
Alignment:
| Q |
8 |
ttaagctcctcaattagttgtttcaacccagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctca |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870342 |
ttaagctcctcaattagttgtttcaacttagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctca |
14870243 |
T |
|
| Q |
108 |
tttctaaacactcttctccacctcccatcaataaacctattgcctttcctatctgatccctcttaaccacatcatccccaaactcattccagtttctcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870242 |
tttctaaacactcttctccacctcccatcaataaacctattgcctttcctatctcatccctcttaaccacatcatccccaaactcattccagtttctcca |
14870143 |
T |
|
| Q |
208 |
ttcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14870142 |
ttcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaa |
14870043 |
T |
|
| Q |
308 |
cctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaacccc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870042 |
cctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaacccc |
14869943 |
T |
|
| Q |
408 |
atatcaaatag |
418 |
Q |
| |
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||||||||||| |
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| T |
14869942 |
atatcaaatag |
14869932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 16908317 - 16908727
Alignment:
| Q |
8 |
ttaagctcctcaattagttgtttcaacccagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctca |
107 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
16908317 |
ttaagctcctcaattagttctttcaacttagtataagaagaaccaccaacctcaatagctttctttgcagcaccactaagtgctttaactcttttcctca |
16908416 |
T |
|
| Q |
108 |
tttctaaacactcttctccacctcccatcaataaacctattgcctttcctatctgatccctcttaaccacatcatccccaaactcattccagtttctcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
16908417 |
tttctaaacactcttctccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactcattccaatttctcca |
16908516 |
T |
|
| Q |
208 |
ttcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaa |
307 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
16908517 |
ttcttttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaa |
16908616 |
T |
|
| Q |
308 |
cctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaacccc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||| |||||||||||||||| || |||||||||||||||| |
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| T |
16908617 |
cctgcatttacactttccataatagtgttccacccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaacccc |
16908716 |
T |
|
| Q |
408 |
atatcaaatag |
418 |
Q |
| |
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||||||||||| |
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| T |
16908717 |
atatcaaatag |
16908727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 418
Target Start/End: Original strand, 5994740 - 5994974
Alignment:
| Q |
184 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaac |
283 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||| || | |||||||| |||||||||||||| | | | ||||||||||||| ||||||||||| |
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| T |
5994740 |
cccaaactcattccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaat |
5994839 |
T |
|
| Q |
284 |
aatggccaagttgccaatggcaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagta |
383 |
Q |
| |
|
|| ||||| || | ||| || || |||| |||||||| | || ||||||||| ||||| ||| |||| | |||||| |||| || ||| |||| |
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| T |
5994840 |
aaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaaccctccaattgcatgattctcaagta |
5994939 |
T |
|
| Q |
384 |
tcagcagttgtggtgcccaaccccatatcaaatag |
418 |
Q |
| |
|
||| || ||||||||||| ||||| ||||||||| |
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| T |
5994940 |
tcaaaagctgtggtgcccatccccaaatcaaatag |
5994974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 17572351 - 17572461
Alignment:
| Q |
184 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaac |
283 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| | || ||||| ||||||||||||| | ||| ||||||| ||||| |||||||||||| |
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| T |
17572351 |
cccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacacatcaacaaccaacttctcattaaaaaaatgttcagcaaac |
17572450 |
T |
|
| Q |
284 |
aatggccaagt |
294 |
Q |
| |
|
|| |||||||| |
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|
| T |
17572451 |
aaaggccaagt |
17572461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 17620367 - 17620259
Alignment:
| Q |
184 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
282 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| | || ||||| |||||||||||| || |||| ||||||| ||||| || |||||||| |
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|
| T |
17620367 |
cccaaactcattccaatttctccattctttagccccaacagaaaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
17620269 |
T |
|
| Q |
283 |
caatggccaa |
292 |
Q |
| |
|
||| |||||| |
|
|
| T |
17620268 |
caaaggccaa |
17620259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 44904108 - 44904029
Alignment:
| Q |
212 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcca |
291 |
Q |
| |
|
||||||||||||| || || |||||||| |||||||| | ||| ||||||||| |||| ||||||||||||| |||||| |
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|
| T |
44904108 |
tttgctccaactgggacccctatcttcaaaacatcaacaagcaacctctcattgtaaaattgttcagcaaacattggcca |
44904029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 14709948 - 14710056
Alignment:
| Q |
184 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
282 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| | ||| ||||| |||||||||||| || |||| ||||||| ||||| || |||||||| |
|
|
| T |
14709948 |
cccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
14710046 |
T |
|
| Q |
283 |
caatggccaa |
292 |
Q |
| |
|
||| |||||| |
|
|
| T |
14710047 |
caaaggccaa |
14710056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 26208266 - 26208187
Alignment:
| Q |
212 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcca |
291 |
Q |
| |
|
|||| |||||||| || ||||||||||| |||||||| | |||| |||||||| |||| || |||||||||| |||||| |
|
|
| T |
26208266 |
tttgatccaactgaaactccaatcttcaaaacatcaacaagcaatttctcattgtaaaattgctcagcaaacattggcca |
26208187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 354
Target Start/End: Complemental strand, 26204740 - 26204598
Alignment:
| Q |
212 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctg |
311 |
Q |
| |
|
|||| |||||| || || ||||||||||| |||||||| | || |||||||| |||| ||||||||||| | |||||| ||| || ||||||||| | |
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|
| T |
26204740 |
tttgatccaaccgcgactccaatcttcaaaacatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccag |
26204641 |
T |
|
| Q |
312 |
catttacactttccataatagtgttccagccacagtgagtcac |
354 |
Q |
| |
|
||| | ||||| | ||| | |||||| |||||||||||||| |
|
|
| T |
26204640 |
aattcaagctttcaagaattgagttccaaccacagtgagtcac |
26204598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 354
Target Start/End: Complemental strand, 26224377 - 26224235
Alignment:
| Q |
212 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctg |
311 |
Q |
| |
|
|||| |||||| || || ||||||||||| |||||||| | || |||||||| |||| ||||||||||| | |||||| ||| || ||||||||| | |
|
|
| T |
26224377 |
tttgatccaaccgcgactccaatcttcaaaacatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccag |
26224278 |
T |
|
| Q |
312 |
catttacactttccataatagtgttccagccacagtgagtcac |
354 |
Q |
| |
|
||| | ||||| | ||| | |||||| |||||||||||||| |
|
|
| T |
26224277 |
aattcaagctttcaagaattgagttccaaccacagtgagtcac |
26224235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 14710144 - 14710181
Alignment:
| Q |
380 |
agtatcagcagttgtggtgcccaaccccatatcaaata |
417 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
14710144 |
agtatcaacatttgtggtgcccaaccccatatcaaata |
14710181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 417
Target Start/End: Complemental strand, 12613833 - 12613646
Alignment:
| Q |
230 |
ccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctgcatttacactttccataa |
329 |
Q |
| |
|
||||| || ||||| ||||||| |||| |||||| ||||| ||||||||||| || |||||||| ||| ||||| || |||| | |||||| | | |
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|
| T |
12613833 |
ccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataaaggccaagtcaccataggcaacccaacattcaaactttcaacta |
12613734 |
T |
|
| Q |
330 |
tagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaata |
417 |
Q |
| |
|
|||||||| ||||| |||||||| | | |||||| || | ||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
12613733 |
ctgtgttccaaccacaatgagtcacaattcctccaatagctttgttctcaagtatcaacaattgtggtgcccaaccccatatcaaata |
12613646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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