View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5246_high_2 (Length: 624)
Name: NF5246_high_2
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 14870943 - 14870338
Alignment:
| Q |
1 |
aatatggactagccgaacataagaattgtcagcaccgaaagaatttgaacactctaagaatctagagaggaaaacactctaagtggtaagtctacaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14870943 |
aatatggactagccgaacataagaattgtcagcaccgaaagaatttgaacactctaagaatctagagaggaaaacactctaagttgtaagtctacaccaa |
14870844 |
T |
|
| Q |
101 |
taaaccaacccctagggtttcagttcaccaagttcatcaaaatttagttgaaattttgagaatgattagtttgatctaacataaacaatgtatagagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14870843 |
taaaccaacccctagggtttcagttcaccaagttcatcaaaatttagttgaaattttgagaatgattagtttgatctaacataaacaatgattagagtac |
14870744 |
T |
|
| Q |
201 |
aaaaatatatatggtacaaatacaactaaactattataatttcacaagttgtacaacactcttatgacgaacacacttctaagcattctgatgaacatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14870743 |
aaaaatatatatggtacaaatacaactaaactattataatttcacaagttgtacaacactcttatgacgaacacacttctaagcattctgatgaacatag |
14870644 |
T |
|
| Q |
301 |
tgatagaaacttttaccaaatgtaaattatttatgaatgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14870643 |
tgatagaaacttttaccaaatgtaaattatttatgaatgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatt |
14870544 |
T |
|
| Q |
401 |
tcatacaaatacaatgtttgcatagacattgttacaaaggaaataaacacacttgttgaaaatgaccacttaattaacttcccaaaacataaacacatgc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14870543 |
tcatacaaatacaatgtttgcatagacattgttacaaaggaaataaacacacttattgaaaatgaccacttaattaacttcccaaaacataaacacatgc |
14870444 |
T |
|
| Q |
501 |
ataaggtctaacacttagttccaatgtagaatgatgcttactaagttgataccaaatcaacctccaatttgttattaaccnnnnnnncaagtttgaatga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14870443 |
ataaggtctaacacttagttccaatgtagaatgatgcttactaagttgataccaaatcaacctccaatttgttattaacctttttttcaagtttgaatga |
14870344 |
T |
|
| Q |
601 |
cttaag |
606 |
Q |
| |
|
|||||| |
|
|
| T |
14870343 |
cttaag |
14870338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 337 - 439
Target Start/End: Original strand, 16907767 - 16907866
Alignment:
| Q |
337 |
atgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatttcatacaaatacaatgtttgcatagacattgttaca |
436 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
16907767 |
atgactaacaaaataatattattgatctaacctctagacaaagg-att--tctcaatcagaatttcatacaaatacaatgattacatagacattgttaca |
16907863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 497
Target Start/End: Original strand, 16907922 - 16907954
Alignment:
| Q |
465 |
accacttaattaacttcccaaaacataaacaca |
497 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
16907922 |
accacttaattaacttcccaaaacaaaaacaca |
16907954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 547
Target Start/End: Original strand, 16908233 - 16908274
Alignment:
| Q |
504 |
aggtctaacacttagttccaatgtagaatgatgcttactaagtt |
547 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
16908233 |
aggtctaacac--agttccaatgtagaatgattcttactaagtt |
16908274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University