View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5246_high_22 (Length: 216)
Name: NF5246_high_22
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 12953199 - 12953379
Alignment:
| Q |
15 |
acatcatcaccaccaccggaacaaattgaagaaccagaaccaacccactcactactcttaggtctctctttctttatctcactcccaatccactccatca |
114 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12953199 |
acatcaccaccaccaccggaacaaatcgaagaaccagaaccaacccactcactactcttaggtctctctttctttatctcactcccaatccactccatca |
12953298 |
T |
|
| Q |
115 |
cataatccttcactctccctgattcagatcctcccccattattctcctgcttccaccaccaatccctcccagaaccaccac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12953299 |
cataatccttcactctccctgattcagatcctcccccattattctcctgcttccaccaccaatccctcccagaaccaccac |
12953379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University