View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5246_high_5 (Length: 536)

Name: NF5246_high_5
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5246_high_5
NF5246_high_5
[»] chr8 (9 HSPs)
chr8 (12-158)||(30428434-30428581)
chr8 (407-460)||(30428388-30428441)
chr8 (293-376)||(15057570-15057653)
chr8 (299-376)||(39460798-39460876)
chr8 (300-376)||(9208662-9208738)
chr8 (344-412)||(37437836-37437907)
chr8 (318-376)||(13474441-13474499)
chr8 (299-376)||(30873441-30873519)
chr8 (488-521)||(30428320-30428353)
[»] chr3 (6 HSPs)
chr3 (284-378)||(15019664-15019757)
chr3 (301-375)||(38054691-38054766)
chr3 (318-376)||(36906438-36906496)
chr3 (299-380)||(55273468-55273550)
chr3 (270-319)||(49519842-49519891)
chr3 (307-378)||(49785874-49785946)
[»] scaffold0031 (1 HSPs)
scaffold0031 (293-378)||(104723-104808)
[»] chr1 (5 HSPs)
chr1 (301-378)||(14188464-14188541)
chr1 (307-380)||(17606115-17606190)
chr1 (357-396)||(35660182-35660221)
chr1 (340-378)||(14485507-14485545)
chr1 (318-378)||(41618037-41618097)
[»] chr7 (6 HSPs)
chr7 (321-378)||(39586506-39586563)
chr7 (299-376)||(16664505-16664583)
chr7 (299-376)||(17638875-17638953)
chr7 (300-378)||(37563842-37563922)
chr7 (343-376)||(18017101-18017134)
chr7 (299-378)||(19544226-19544305)
[»] chr2 (4 HSPs)
chr2 (270-382)||(31089182-31089293)
chr2 (299-378)||(22302389-22302470)
chr2 (307-378)||(13913803-13913874)
chr2 (303-360)||(45414575-45414632)
[»] scaffold0018 (1 HSPs)
scaffold0018 (299-412)||(30169-30286)
[»] chr4 (1 HSPs)
chr4 (299-368)||(27587693-27587763)
[»] chr6 (2 HSPs)
chr6 (299-372)||(24081869-24081944)
chr6 (326-378)||(12176319-12176371)
[»] chr5 (2 HSPs)
chr5 (319-378)||(10463546-10463605)
chr5 (300-376)||(15146134-15146211)
[»] scaffold0024 (1 HSPs)
scaffold0024 (299-376)||(111589-111667)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 30428581 - 30428434
Alignment:
Q  12 aaatattaaaatgtaatttgacaatgtgttcaattttttatttgaataaaaa-taccatttttcactatttgaaatcactgtgaaaccaaagataatttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30428581 aaatattaaaatgtaatttgacaatgtgttcaattttttatttgaataaaaaataccatttttcactatttgaaatcactgtgaaaccaaagataatttt 30428482  T
Q  111 ataaattttaatcaaagtgtgtgtgaaatagcaaggtgggtgcaaatt 158  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30428481 ataaattttaatcaaagtgtgtgtgaaatagcaaggtggctgctaatt 30428434  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 407 - 460
Target Start/End: Complemental strand, 30428441 - 30428388
Alignment:
Q  407 tgctaatttacgccataacttgatgttgattgcattagtagtgtgaggaacgtg 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30428441 tgctaatttacgccataacttgatgttgattgcattagtagtgtgaggaacgtg 30428388  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 15057653 - 15057570
Alignment:
Q  293 aaagtgggtgcaaattaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    |||||| ||| ||||||||||| ||| | ||| |||||||||   | |||||| |||||||||||||||||||||||| |||||    
T  15057653 aaagtgagtggaaattaacaaacattgtaaatgaaagttacacggctaacccttaagttactagttttaaataataaaaatgaa 15057570  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 39460798 - 39460876
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    ||||||| ||||||||| | ||||||| ||| |||| |||  |||||||||| || |||||||||||||||||||||||    
T  39460798 ggtgcaagttaacaaatctgttttaatgaaaattactaaagtaaccctcaagctattagttttaaataataaagatgaa 39460876  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 9208738 - 9208662
Alignment:
Q  300 gtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    |||||||||||||||||| ||||||| ||| |||| |||  ||||||| || || |||||||||||||||||||||||    
T  9208738 gtgcaaattaacaaatatgttttaatgaaa-ttactaaagtaaccctctagctattagttttaaataataaagatgaa 9208662  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 412
Target Start/End: Original strand, 37437836 - 37437907
Alignment:
Q  344 ctcaagttactagttttaaataataaagatgaatgg---tttgttccaaatgaaaacgtgcacgtttgctaa 412  Q
    ||||||||| ||||||||||||||||||||||||||   |||  |||||||||||| |||||| ||| ||||    
T  37437836 ctcaagttattagttttaaataataaagatgaatggtatttttgtccaaatgaaaatgtgcacattttctaa 37437907  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 13474441 - 13474499
Alignment:
Q  318 ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    ||||||||||| |||| |||  |||| ||||| || |||||||||||||||||||||||    
T  13474441 ttttaataaaaattactaaagtaaccttcaagctattagttttaaataataaagatgaa 13474499  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 30873519 - 30873441
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    ||||||| ||||||||||| ||||||| ||| |||| |||  |||||||||  || || ||||||||||||||||||||    
T  30873519 ggtgcaagttaacaaatatgttttaatgaaaattactaaagtaaccctcaaactattaattttaaataataaagatgaa 30873441  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Complemental strand, 30428353 - 30428320
Alignment:
Q  488 gaaaaaacctaaaatgaaattgtattaatcaatc 521  Q
    ||||||| ||||||||||||||||||||||||||    
T  30428353 gaaaaaagctaaaatgaaattgtattaatcaatc 30428320  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 15019664 - 15019757
Alignment:
Q  284 taaatcagcaaagtgggtgcaaattaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||| |||||| |||||||||||| ||||| ||||||||| |||||||| |||| |||||| |||||| ||| ||||| |||||||||| ||||    
T  15019664 taaattagcaaaatgggtgcaaatt-acaaacatttttaatgaaagttacgaaactaaccctaaagttattagctttaattaataaagataaatg 15019757  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 375
Target Start/End: Complemental strand, 38054766 - 38054691
Alignment:
Q  301 tgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatga 375  Q
    ||||| ||||||||||| ||||||||||| |||| |||  |||||||||| || ||||||||||||||||||||||    
T  38054766 tgcaagttaacaaatatgttttaataaaaattactaaagtaaccctcaagctattagttttaaataataaagatga 38054691  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 36906438 - 36906496
Alignment:
Q  318 ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    ||||||| ||| |||| |||  |||||||||| || |||||||||||||||||||||||    
T  36906438 ttttaatgaaaattactaaagtaaccctcaagctattagttttaaataataaagatgaa 36906496  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 55273468 - 55273550
Alignment:
Q  299 ggtgcaaattaacaaatatttt-taataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatggt 380  Q
    ||||||| |||||||||||||| |||||||| |||| |||  |||| |||| ||| | || |||||||||||| |||||||||    
T  55273468 ggtgcaacttaacaaatattttataataaaaattactaaagtaaccttcaaattatttgtgttaaataataaaaatgaatggt 55273550  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 49519842 - 49519891
Alignment:
Q  270 taataaagtgagagtaaatcagcaaagtgggtgcaaattaacaaatattt 319  Q
    |||||||||||  |||||| ||||| |||||||||||| |||||||||||    
T  49519842 taataaagtgaaggtaaattagcaatgtgggtgcaaatcaacaaatattt 49519891  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 49785946 - 49785874
Alignment:
Q  307 ttaacaaatatttt-taataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    |||||||||||||| |||| ||| |||| |||  |||| ||| |||| || ||||||||||||||||||||||    
T  49785946 ttaacaaatattttataatgaaaattactaaattaaccttcacgttattaattttaaataataaagatgaatg 49785874  T

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Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 104723 - 104808
Alignment:
Q  293 aaagtgggtgcaaattaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||| |||||||||||||||| ||||||||| ||||||| | ||| ||| || ||||||||||||||||||| || |||| ||||    
T  104723 aaagtaggtgcaaattaacaaacatttttaatgaaagttagataactaacacttaagttactagttttaaatagtatagataaatg 104808  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 14188464 - 14188541
Alignment:
Q  301 tgcaaattaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||||||||||||| |||||||| ||| |||| |||  |||| ||||| || |||||||||||||||||||||||||    
T  14188464 tgcaaattaacaaatgtttttaatgaaaattacgaaaataaccttcaagctattagttttaaataataaagatgaatg 14188541  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 17606115 - 17606190
Alignment:
Q  307 ttaacaaatattttta--ataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatggt 380  Q
    ||||||||||||||||  || ||| |||| |||  ||| ||||| ||| |||||||||||||||||||||||||||    
T  17606115 ttaacaaatatttttataatgaaaattactaaattaactctcaaattattagttttaaataataaagatgaatggt 17606190  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 35660221 - 35660182
Alignment:
Q  357 ttttaaataataaagatgaatggtttgttccaaatgaaaa 396  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  35660221 ttttaaataataaagatgaatggtttgatccaaataaaaa 35660182  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 14485545 - 14485507
Alignment:
Q  340 aaccctcaagttactagttttaaataataaagatgaatg 378  Q
    |||||||||| || |||||||||||||||||||||||||    
T  14485545 aaccctcaagctattagttttaaataataaagatgaatg 14485507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 41618097 - 41618037
Alignment:
Q  318 ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||||| ||| |||| |||  |||| |||||||| |||||||||||| ||||||||||||    
T  41618097 ttttaatgaaaattactaaagtaaccatcaagttattagttttaaatattaaagatgaatg 41618037  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 39586506 - 39586563
Alignment:
Q  321 taataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    |||||||| |||| |||  ||||||||||||| |||||||||||||||||||||||||    
T  39586506 taataaaaattactaaagtaaccctcaagttattagttttaaataataaagatgaatg 39586563  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 16664583 - 16664505
Alignment:
Q  299 ggtgcaaattaacaaatatttt-taataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    |||||| ||||||||||||||| | ||||||||||  |||  |||||||||| || ||||||| |||||||||||||||    
T  16664583 ggtgcagattaacaaatattttatcataaaagttattaaagtaaccctcaagctattagtttttaataataaagatgaa 16664505  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 17638953 - 17638875
Alignment:
Q  299 ggtgcaaattaacaaatatttt-taataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    |||||| ||||||||||||||| | ||||||||||  |||  |||||||||| || ||||||| |||||||||||||||    
T  17638953 ggtgcagattaacaaatattttatcataaaagttattaaagtaaccctcaagctattagtttttaataataaagatgaa 17638875  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 37563922 - 37563842
Alignment:
Q  300 gtgcaaattaacaaatatt--tttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||| |||||||||||||  |||||| |||  ||| |||  |||||||||| || |||||||||||||||||||||||||    
T  37563922 gtgcagattaacaaatattgttttaatgaaaaatactaaagtaaccctcaagctattagttttaaataataaagatgaatg 37563842  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 18017134 - 18017101
Alignment:
Q  343 cctcaagttactagttttaaataataaagatgaa 376  Q
    |||||||||| |||||||||||||||||||||||    
T  18017134 cctcaagttattagttttaaataataaagatgaa 18017101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 19544305 - 19544226
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||||| ||||||||||| ||||||| ||| |||  |||  |||||||||  || |||||||||||||||||||||||||    
T  19544305 ggtgcaagttaacaaatatgttttaatgaaaattattaaat-aaccctcaaactattagttttaaataataaagatgaatg 19544226  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 31089293 - 31089182
Alignment:
Q  270 taataaagtgagagtaaatcagcaaagtgggtgcaaattaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataa 369  Q
    ||||||||||||  ||||| |  ||||| | || |||||||||||||||||| || ||||||| |||||  || ||||| |||  ||||| |||||||||    
T  31089293 taataaagtgagtttaaattaataaagttgatgtaaattaacaaatatttttcatgaaagttataaaactgactctcaaattatgagttt-aaataataa 31089195  T
Q  370 agatgaatggttt 382  Q
    |||||||||||||    
T  31089194 agatgaatggttt 31089182  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 22302389 - 22302470
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaata-aaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||||| ||||||||||| |||||||  ||| |||| |||  |||||||||| || |||||||||||||||||||||||||    
T  22302389 ggtgcaagttaacaaatatgttttaatgcaaaattactaaagtaaccctcaagctattagttttaaataataaagatgaatg 22302470  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 13913803 - 13913874
Alignment:
Q  307 ttaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||||||| ||| |||| ||| |||| |||  ||| |||| |||| |||||||||||||||||||||||||    
T  13913803 ttaacaaatttttgtaatgaaaattactaaattaactctcacgttattagttttaaataataaagatgaatg 13913874  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 45414575 - 45414632
Alignment:
Q  303 caaattaacaaatatttttaataaaagttacaaaaccaaccctcaagttactagtttt 360  Q
    |||||||||||| ||||||||| ||| ||| ||||| |||| |||||| |||||||||    
T  45414575 caaattaacaaacatttttaatgaaaattataaaactaaccttcaagtaactagtttt 45414632  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 30286 - 30169
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatga---atggtttgttccaaatgaa 394  Q
    ||||||| ||||||||||| ||||||| ||| |||| |||  ||| |||||| || ||||||||||||||||||||||   ||  |||  ||||||||||    
T  30286 ggtgcaagttaacaaatatgttttaatgaaaattactaaagtaacgctcaagctattagttttaaataataaagatgaaggatatttttgtccaaatgaa 30187  T
Q  395 aacgtgcacgtttgctaa 412  Q
    || |||||| ||||||||    
T  30186 aaggtgcacttttgctaa 30169  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 27587693 - 27587763
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataata 368  Q
    ||||||||||||||||||| ||||||| ||| |||| |||  |||||||||| || |||||||||||||||    
T  27587693 ggtgcaaattaacaaatatgttttaatgaaaattactaaagtaaccctcaagctattagttttaaataata 27587763  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 24081944 - 24081869
Alignment:
Q  299 ggtgcaaattaacaaatat--ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaaga 372  Q
    |||||||||||||||||||  ||||||| ||| |||| |||  ||| |||||| || |||||||||||||||||||    
T  24081944 ggtgcaaattaacaaatatgtttttaatgaaaattactaaaataactctcaagctattagttttaaataataaaga 24081869  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 12176371 - 12176319
Alignment:
Q  326 aaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    ||||||||||||  |||||||||  || |||||||||||||||||| ||||||    
T  12176371 aaagttacaaaagtaaccctcaatgtaatagttttaaataataaaggtgaatg 12176319  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 10463605 - 10463546
Alignment:
Q  319 tttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaatg 378  Q
    |||||| ||||||||||||| |||| |||| ||||||||||||| | | |||||||||||    
T  10463605 tttaatgaaagttacaaaactaaccttcaatttactagttttaagtcacaaagatgaatg 10463546  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 15146134 - 15146211
Alignment:
Q  300 gtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    |||||| ||||||||||| ||||| | ||| |||| |||  |||||||||  || |||||||||||||||||||||||    
T  15146134 gtgcaagttaacaaatatgttttattgaaaattactaaattaaccctcaaactattagttttaaataataaagatgaa 15146211  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 111667 - 111589
Alignment:
Q  299 ggtgcaaattaacaaatat-ttttaataaaagttacaaaaccaaccctcaagttactagttttaaataataaagatgaa 376  Q
    ||||||| ||||||||||| ||||||| ||| |||| |||  |||||||||| || || ||||||||||| ||||||||    
T  111667 ggtgcaagttaacaaatatattttaatgaaaattactaaaataaccctcaagctattatttttaaataattaagatgaa 111589  T

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