View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5246_low_10 (Length: 383)

Name: NF5246_low_10
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5246_low_10
NF5246_low_10
[»] chr3 (3 HSPs)
chr3 (1-373)||(40146765-40147137)
chr3 (1-192)||(8103025-8103219)
chr3 (228-369)||(8102812-8102953)
[»] chr4 (7 HSPs)
chr4 (2-227)||(7655517-7655742)
chr4 (123-200)||(7606777-7606854)
chr4 (2-195)||(7629167-7629363)
chr4 (146-195)||(7615778-7615827)
chr4 (2-195)||(7637613-7637809)
chr4 (258-296)||(39082796-39082834)
chr4 (257-333)||(7629008-7629084)
[»] chr6 (3 HSPs)
chr6 (1-194)||(6501058-6501250)
chr6 (224-282)||(11969370-11969428)
chr6 (2-99)||(11969553-11969650)
[»] chr7 (1 HSPs)
chr7 (146-227)||(8935625-8935706)


Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 40146765 - 40147137
Alignment:
Q  1 gcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40146765 gcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaattcatgggcg 40146864  T
Q  101 aaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40146865 aaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta 40146964  T
Q  201 tagagtcacaaaagaatgactctgatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaa 300  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40146965 tagagccacaaaagaatgactctgatgataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaa 40147064  T
Q  301 agccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147065 agccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg 40147137  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8103219 - 8103025
Alignment:
Q  1 gcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcg 100  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||| |||   ||  |||||  ||||||||| || |||||     
T  8103219 gcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtatttcattaattcgtgggct 8103120  T
Q  101 aaaatctcgc---gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcc 192  Q
     ||||||| |   |||||||||||||||||  ||||||||||  ||| || |||||||||||||||  ||||||||||  |||||||||||||||    
T  8103119 gaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatgtcccatacgatttcc 8103025  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 369
Target Start/End: Complemental strand, 8102953 - 8102812
Alignment:
Q  228 ataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa 327  Q
    ||||||||||| ||||  ||||||  |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || |  ||||| |||||    
T  8102953 ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaa 8102854  T
Q  328 aatatcatccctccaatcactttttacacatctttggcgctc 369  Q
    |||||| ||||| ||| |||||||| |||| |||||| ||||    
T  8102853 aatatcttcccttcaagcactttttgcacacctttggtgctc 8102812  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 7655517 - 7655742
Alignment:
Q  2 caagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcga 101  Q
    ||||| || ||| ||||||||||| |||||||||| ||||  || |||||||  || | ||||||| ||||||| |||| |||||| || || |||||      
T  7655517 caagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacggacagtccacgtggcatttcatcaattcgtgggctg 7655616  T
Q  102 aaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactat 201  Q
    |||| || |||||||||    ||||| |||| ||   |  |||||| || ||||||||||||| ||| |||||||  || |||||||||||||| |||||    
T  7655617 aaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacgacctatacgatttcctttaactat 7655716  T
Q  202 agagtcacaaaagaatgactctgatg 227  Q
    |||| ||||||||||| |||||||||    
T  7655717 agagccacaaaagaatcactctgatg 7655742  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 7606854 - 7606777
Alignment:
Q  123 atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta 200  Q
    ||||| ||||||||| |  ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  7606854 atcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcacta 7606777  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 7629363 - 7629167
Alignment:
Q  2 caagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcga 101  Q
    ||||| || ||| ||||||||||  |||| |||||||  ||||| |||||||  |||||||||||| |||||   |||| |||||| || ||||||||      
T  7629363 caagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatttcatcaattcatgggctg 7629264  T
Q  102 aaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 195  Q
    ||||||| ||| ||||||| ||  ||||| |||| ||||    |||    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7629263 aaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaacttcccatacgatttccttt 7629167  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 7615827 - 7615778
Alignment:
Q  146 ctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 195  Q
    ||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  7615827 ctagagcgttggtttccaaatggtgttcaacagcccatacgatttccttt 7615778  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 7637809 - 7637613
Alignment:
Q  2 caagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcga 101  Q
    ||||| || ||| ||||||||||  | ||||||||||   ||||||||||||  || ||||||||| |||||   |||| |||||| || || |||||      
T  7637809 caagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcctgggctg 7637710  T
Q  102 aaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 195  Q
    ||||||| ||| ||||||| ||  ||||| |||| |||| |  ||| ||||| ||||||||||||| |||| ||||||  || ||||||||||||||    
T  7637709 aaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggcctatacgatttccttt 7637613  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
Q  258 tattccatttcacaaaggagaaaatcgctcaactgaaat 296  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  39082834 tattccatttcacaaaggagaaaatcgcggaactgaaat 39082796  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 7629084 - 7629008
Alignment:
Q  257 ttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatc 333  Q
    |||||||| || ||||||||||||||||  ||||||||||  |||  |||||  |||||||||| || |||||||||    
T  7629084 ttattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatatc 7629008  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 6501250 - 6501058
Alignment:
Q  1 gcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcg 100  Q
    |||||||||||||||||||| |||  |||| ||||| |||| ||| ||||||| |||   ||  ||| ||||||  |||| ||| || |  || |||||     
T  6501250 gcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggct 6501151  T
Q  101 aaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcctt 194  Q
     |||| || ||||||||||| |||||| |||||||||||  | | |||||||||| |||||||| || |||||| | | |||||||||||||||    
T  6501150 gaaatttcacgtggttgttgtaatcaaatatccaaactcccatcactagaacgtt-gtttccaaatgatattcagcgttccatacgatttcctt 6501058  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
Q  224 gatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat 282  Q
    ||||| || |||||| ||||| || |||||||||||||||||||||||||| |||||||    
T  11969428 gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat 11969370  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 11969650 - 11969553
Alignment:
Q  2 caagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggc 99  Q
    ||||| |||||||||||||| ||| |||||||||| |||||| | || ||||  |  |||||||||| |||||| |||| |||||| || ||||||||    
T  11969650 caagtaacagagttagttgatggcatcttcattggctttacaatcaatcatgtcgccgttgacggagtgtccacttggcatttcatcaattcatgggc 11969553  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 8935625 - 8935706
Alignment:
Q  146 ctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg 227  Q
    |||||||||||||||||   |||| ||||||  || |||||||||||||| ||| | |||  |||||||||| |||||||||    
T  8935625 ctagaacgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatg 8935706  T

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