View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_11 (Length: 345)
Name: NF5246_low_11
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 17717151 - 17717466
Alignment:
| Q |
17 |
actatttggtctagaaaccaatgttaaatcaattattgatatattatatcatcaattgttattaagcactaaatattgattaagttattattttttgaat |
116 |
Q |
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| T |
17717151 |
actatttggtctagaaacgaatgttaaatcaattattgatatattatatcatcaattgttattaagcactaaatattgattaagttattattttttgaat |
17717250 |
T |
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| Q |
117 |
ggtttgtgatcggttgaaccattgtgttaagcttaatgagattttcggtccttagcctaacattatcgacattagtgtttaagatttaatcctctttctt |
216 |
Q |
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| T |
17717251 |
ggtttgtgatcggttgaaccattgtgttaagcttaatgagattttcggtccttagcctaacattatcgacattagtgtttaagatttaatcctctttctt |
17717350 |
T |
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| Q |
217 |
aattatttgattcattggctaaacagttagggtatgaaattgcctaaatatcagcattcattcttatctcattctattaaaataatttgttactaataat |
316 |
Q |
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| T |
17717351 |
aattacttgattcattggctaaacagttagggtatgaagttgcctaaatatcagcattcattcttatctcattctattaaaataatttgttactaataat |
17717450 |
T |
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| Q |
317 |
gtgggctggtactatt |
332 |
Q |
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|||||||||||||||| |
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| T |
17717451 |
gtgggctggtactatt |
17717466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 17707454 - 17707748
Alignment:
| Q |
18 |
ctatttggtctagaaaccaatgttaaatcaattattgatatattatatcatcaattgttattaagcactaaatattgattaagttattattttttgaatg |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17707454 |
ctatttggtctagaaacgaatgttaaatcaattattgatatattatatcatcaattgttattaagcactaaatattgattaagttattattttttgaatg |
17707553 |
T |
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| Q |
118 |
gtttgtgatcggttgaaccattgtgttaagcttaatgagattttcggtccttagcctaacattatcgacattagtgtttaagatttaatcctctttctta |
217 |
Q |
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| T |
17707554 |
gtttgtgatcggttgaaccattgtgttaagcttaatgagattttcggtccttagcctaacattatcgacattagtgtttaagatttcatcctctttct-- |
17707651 |
T |
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| Q |
218 |
attatttgattcattggctaaacagttagggtatgaaattgcctaaatatcagcattcattcttatctcattctattaaaataatttgttactaataatg |
317 |
Q |
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| T |
17707652 |
------------------taaacagttagggtatgaagttgcctaaatatcagcattcattcttatctcattctatgaaaataatttgttactaataatg |
17707733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 16721285 - 16721333
Alignment:
| Q |
284 |
ctcattctattaaaataatttgttactaataatgtgggctggtactatt |
332 |
Q |
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||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
16721285 |
ctcattctattaaaataatttgttactgataatgtgggttcgtactatt |
16721333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 17698299 - 17698347
Alignment:
| Q |
284 |
ctcattctattaaaataatttgttactaataatgtgggctggtactatt |
332 |
Q |
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||||||||||||||||||||||||||| |||||||||| | |||||||| |
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| T |
17698299 |
ctcattctattaaaataatttgttactgataatgtgggttcgtactatt |
17698347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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