View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_12 (Length: 340)
Name: NF5246_low_12
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 15160113 - 15160424
Alignment:
| Q |
16 |
aaaaattcaccttcatcatcctacaattttgagtacataactctcaaggatctcttattggattcaaactttagaggaggaggcatttcagtcataaatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15160113 |
aaaaattcaccttcatcatcctacaattttgagtacataactctcaaggatctcttattggattcaaactttagaggaggaggcatttcagtcataaatt |
15160212 |
T |
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| Q |
116 |
cactcagaacaaacatagacaactgttacattacacatttcactaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttcct |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15160213 |
cactcagaacaaacatagacaattgttacattacacatttcactaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttcct |
15160312 |
T |
|
| Q |
216 |
tggccagcacataactgccggtggcgataaaaacgaaaggaatttctcaggcacaggaataaacatccaaggtaacgataatgctgtcaccgatgttgta |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15160313 |
tggccagcacataactgccggaggcgataaaaacgaaaggaatttctcaggcacaggaataaacatccaaggtaacgataatgctgtcaccgatgttgta |
15160412 |
T |
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| Q |
316 |
attttctctgct |
327 |
Q |
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|||||||||||| |
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| T |
15160413 |
attttctctgct |
15160424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 268
Target Start/End: Complemental strand, 5460932 - 5460701
Alignment:
| Q |
37 |
tacaattttgagtacataactctcaaggatctcttattggattcaaactttagaggaggaggcatttcagtcataaattcactcagaacaaacatagaca |
136 |
Q |
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||||||| |||||||||||| |||||||||||||| | || |||||||| | ||| ||||| |||||| ||| ||||||||| |||| |||||||||| |
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| T |
5460932 |
tacaattatgagtacataacactcaaggatctctttctagactcaaacttcaaaggtggaggaatttcaatcacaaattcactaagaatcaacatagaca |
5460833 |
T |
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| Q |
137 |
actgttacattacacatttcactaccaatggaattttagtccaaagtggccatgaaacatacataagaaactctttccttggccagcacataactgccgg |
236 |
Q |
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| T |
5460832 |
attgttacatcacacatttcatcacaaatggaattttagtccaaagtggtcatgaaacatacattagaaacactttcattggtcaacacataactgcagg |
5460733 |
T |
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| Q |
237 |
tggcgataaaaacgaaaggaatttctcaggca |
268 |
Q |
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|| || ||||| ||||| || || ||||||| |
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| T |
5460732 |
aggtgacaaaaatgaaagaaaattttcaggca |
5460701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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