View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_18 (Length: 258)
Name: NF5246_low_18
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 44178217 - 44178433
Alignment:
| Q |
16 |
catcctcaagaactgccctcttcttacgcggagggcatgtatcatcagagactgctctttctgaattggcgccttgcggatgcttttgactttcttgtgc |
115 |
Q |
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| T |
44178217 |
catcctcaagagctgccctcttcttacgcggaaggcatgtatcatcagagactgctctttctgaattggcgccttgcggatgcttttgactttcttgtgc |
44178316 |
T |
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| Q |
116 |
tacatccttcaatggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagctttcgaactgacactc |
215 |
Q |
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| T |
44178317 |
tacatccttcaatggtggcaactgtccagttgcacttaaagcagcagctcgtgcgcgagttaatctaaccgggacctctccagctttcgaactgacactc |
44178416 |
T |
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| Q |
216 |
ttatctttcttcttctc |
232 |
Q |
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|||||||||||| |||| |
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| T |
44178417 |
ttatctttcttcatctc |
44178433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 44171730 - 44171821
Alignment:
| Q |
112 |
gtgctacatccttcaatggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagctttc |
203 |
Q |
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| T |
44171730 |
gtgctacctccttcattggtggtaactgtccagttgtactcaaagccacagctcgagcacgagtcaatcgacttggaacctctccagctttc |
44171821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 1538699 - 1538777
Alignment:
| Q |
128 |
tggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagctttcgaa |
206 |
Q |
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| T |
1538699 |
tggtggaaactgtccagtttcacttaaagcagcagctcgtgtgtgagttaatcaaaccagaacctctccaactttcgaa |
1538777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 17768746 - 17768824
Alignment:
| Q |
128 |
tggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagctttcgaa |
206 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||| | ||||||||| |||||||| |
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| T |
17768746 |
tggtggaaactgtccagtttcacttaaagcagcagctcgtgtgtgagttaatcaaaccagaacctctccaactttcgaa |
17768824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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