View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_19 (Length: 249)
Name: NF5246_low_19
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32790078 - 32789855
Alignment:
| Q |
1 |
ctttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttag |
100 |
Q |
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| T |
32790078 |
ctttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttag |
32789979 |
T |
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| Q |
101 |
aagggaagctagtaagagaagttaagtagtttgagagggtatcgtgtataaaatataaataggataaataaggatga-cgagggatctggtacatttgtt |
199 |
Q |
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| T |
32789978 |
aagggaagctagtaagagaagtttagtagtttgagaggatatcgtgtataaaacataaataggataaataaggatgagcgagggatctggtacatttgtt |
32789879 |
T |
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| Q |
200 |
tgttgtattttgaatggataaagt |
223 |
Q |
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| T |
32789878 |
tgttgtattttgaatggataaagt |
32789855 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 48283032 - 48282975
Alignment:
| Q |
38 |
attgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaa |
95 |
Q |
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| T |
48283032 |
attgttaggatctatccttatagttatttagttaagaagataagttaactagttagaa |
48282975 |
T |
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