View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_3 (Length: 596)
Name: NF5246_low_3
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 22517271 - 22517659
Alignment:
| Q |
8 |
ataatactgtcaagggaacaccacttaaagaatgatcaattttactctgctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaa |
107 |
Q |
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| T |
22517271 |
ataatactgtcaagggaacaccacttaaagaatgatcatttttactctgctgctttaattgcaaacctgtgatgaagaagggacctgatgcatcccaaaa |
22517370 |
T |
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| Q |
108 |
agttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggttt |
207 |
Q |
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| T |
22517371 |
agttatgcctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaagttaatcccacctttgtggttt |
22517470 |
T |
|
| Q |
208 |
gtttcaattgaaataagttgtggatgattttttatcatctgattgtaatactcatctgcagaataaaacacaccggtgttgttggagatgaatatttcta |
307 |
Q |
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| T |
22517471 |
gtttcaattgaaacaagttgtggatgatttttgatcatctgactgtaatactcatctgcagaataaaacacaccggtgttgttggagatgttcttttcta |
22517570 |
T |
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| Q |
308 |
tggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaatgaggaagttgacttagattggcctctcaattga |
396 |
Q |
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| T |
22517571 |
tggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaaggagggagttgacttagattggcctctcaattga |
22517659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 393 - 578
Target Start/End: Original strand, 22517893 - 22518078
Alignment:
| Q |
393 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
492 |
Q |
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| T |
22517893 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaatgctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaatagaa |
22517992 |
T |
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| Q |
493 |
aattgtgggagaaacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaa |
578 |
Q |
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|||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
22517993 |
aattgtgggaaaaacgaaagcggtatcgatccaccgggatcgaaacatttgagacagtcgaagcttaaaggaattgattgtgcaaa |
22518078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 393 - 578
Target Start/End: Complemental strand, 37191548 - 37191362
Alignment:
| Q |
393 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
492 |
Q |
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| T |
37191548 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacgacggagccattgtacacggcaatgagaacaacgaattcgaaacataa |
37191449 |
T |
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| Q |
493 |
aattgtgggagaaacgacagcgg-catcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaa |
578 |
Q |
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| T |
37191448 |
aattgtgggagaaacgacagcggaaatcaatccatggggatcgaaacatttgagacagtcgaagcttagcggaactgattgtgcaaa |
37191362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 54 - 259
Target Start/End: Original strand, 9710354 - 9710559
Alignment:
| Q |
54 |
ctgctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatg |
153 |
Q |
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||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9710354 |
ctgctgctttaattgcaaaactgggatgaagaagggacatgatgcatcccaaaatgttatggctccattatggtgtccagttatgtacaagtttttaatg |
9710453 |
T |
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| Q |
154 |
tttgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgt |
253 |
Q |
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| T |
9710454 |
tttgaaaatccagtgaagttggcagaactcaggttaagcccatctttgtgatttgtttcaattggaataagctgtggataacttttgatcatttgactat |
9710553 |
T |
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| Q |
254 |
aatact |
259 |
Q |
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|||||| |
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| T |
9710554 |
aatact |
9710559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 505 - 578
Target Start/End: Original strand, 13885153 - 13885226
Alignment:
| Q |
505 |
aacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaa |
578 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
13885153 |
aacgacagcggcatcgatccaccgggatcgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaa |
13885226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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