View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5246_low_4 (Length: 584)

Name: NF5246_low_4
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5246_low_4
NF5246_low_4
[»] chr4 (10 HSPs)
chr4 (11-162)||(5847097-5847247)
chr4 (9-164)||(5885172-5885322)
chr4 (218-392)||(5884840-5885012)
chr4 (218-392)||(5846770-5846942)
chr4 (218-312)||(5882342-5882434)
chr4 (9-69)||(5851963-5852020)
chr4 (358-392)||(5882293-5882327)
chr4 (12-61)||(5606071-5606120)
chr4 (411-451)||(5846672-5846712)
chr4 (411-451)||(5884742-5884782)
[»] chr8 (2 HSPs)
chr8 (10-127)||(23268616-23268731)
chr8 (230-308)||(23268838-23268919)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 5847247 - 5847097
Alignment:
Q  11 cagagaaggaaggaaaacaatgtaagaaatgtaattgatctcattgttgtttaattactcttgagtgacaaaaacggaacaaatggtttgttttataaag 110  Q
    |||| |||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||| ||||||||| ||| | ||||||||||||| ||||||||    
T  5847247 cagataaggaaggaaaagaatgtaagtaatgtaatcgatctcattgttggttaattactct-gagtgacaacaacagcacaaatggtttgtgttataaag 5847149  T
Q  111 tttcagaaacatgcatacatacacaatatgtcatgtgttttgcattgtggaa 162  Q
    ||||||||| |||||||||||||||||   ||| ||||||||||||||||||    
T  5847148 tttcagaaatatgcatacatacacaatcattcacgtgttttgcattgtggaa 5847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 5885322 - 5885172
Alignment:
Q  9 agcagagaaggaaggaaaacaatgtaagaaatgtaattgatctcattgttgtttaattactcttgagtgacaaaaacggaacaaatggtttgttttataa 108  Q
    |||||| ||||| ||||||| ||| ||| |||||||| ||||||||||||| ||||||||||| ||||||||| |||   ||||||||||||||||||||    
T  5885322 agcagataaggatggaaaacgatgaaagtaatgtaatcgatctcattgttggttaattactct-gagtgacaacaacaacacaaatggtttgttttataa 5885224  T
Q  109 agtttcagaaacatgcatacatacacaatatgtcatgtgttttgcattgtggaaca 164  Q
    ||||||||||| |||    ||||||||||||||||||||||||||| |||||||||    
T  5885223 agtttcagaaatatg----catacacaatatgtcatgtgttttgcactgtggaaca 5885172  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 218 - 392
Target Start/End: Complemental strand, 5885012 - 5884840
Alignment:
Q  218 taagaattcatcatgatgcattaaagttgtccactttccatattaagcttagtctttttgggccttccattgtggctgagaaaaatgttaccttaaaaag 317  Q
    ||||||| |||||||||||||||| ||| |||||||||||||  |||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||    
T  5885012 taagaatccatcatgatgcattaa-gttttccactttccata--aagcatagtctttttgggtcgtccattgtggatgagaaaaatgttgccttaaaaag 5884916  T
Q  318 gccaagacatcattggannnnnnngtacaaccatgttatg-tgtctgtcactagtcaaatgataggaaagttcatt 392  Q
      ||||||| ||||| |       |||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  5884915 agcaagacaacattgaaattttttgtacaaccatgttatgttgtctgtctccagtcaaatgataggaaagttcatt 5884840  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 218 - 392
Target Start/End: Complemental strand, 5846942 - 5846770
Alignment:
Q  218 taagaattcatcatgatgcattaaagttgtccactttccatattaagcttagtctttttgggccttccattgtggctgagaaaaatgttaccttaaaaag 317  Q
    ||||||| |||||||||||||||| |||||||||||| ||||  |||| ||||||||||||| | |||||||||| ||||||||| ||| ||||||||||    
T  5846942 taagaatccatcatgatgcattaa-gttgtccacttttcata--aagcatagtctttttgggtcgtccattgtggatgagaaaaacgttgccttaaaaag 5846846  T
Q  318 gccaagacatcattggannnnnnngtacaaccatgttatg-tgtctgtcactagtcaaatgataggaaagttcatt 392  Q
    | ||||||| ||||| |       | |||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  5846845 ggcaagacaacattgaattttttggcacaaacatgttatgttgtctgtcaccagtcaaatgataggaaagttcatt 5846770  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 5882434 - 5882342
Alignment:
Q  218 taagaattcatcatgatgcattaaagttgtccactttccatattaagcttagtctttttgggccttccattgtggctgagaaaaatgttacctta 312  Q
    ||||||| ||||||||||||||||||||||||||||| ||||  |||| ||||||||||||| | |||||||||| |||||||||||||||||||    
T  5882434 taagaatccatcatgatgcattaaagttgtccacttttcata--aagcatagtctttttgggtcgtccattgtggatgagaaaaatgttacctta 5882342  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 5852020 - 5851963
Alignment:
Q  9 agcagagaaggaaggaaaacaatgtaagaaatgtaattgatctcattgttgtttaattact 69  Q
    ||||||||| |||||||||||||| ||| ||||||||   |||||||||||||||||||||    
T  5852020 agcagagaatgaaggaaaacaatggaagtaatgtaat---tctcattgttgtttaattact 5851963  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 5882327 - 5882293
Alignment:
Q  358 tgtctgtcactagtcaaatgataggaaagttcatt 392  Q
    ||||||||||||| |||||||||||||||||||||    
T  5882327 tgtctgtcactagccaaatgataggaaagttcatt 5882293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5606071 - 5606120
Alignment:
Q  12 agagaaggaaggaaaacaatgtaagaaatgtaattgatctcattgttgtt 61  Q
    |||||||||| ||||||| || ||  ||||||||||||||||||||||||    
T  5606071 agagaaggaaagaaaacattgaaactaatgtaattgatctcattgttgtt 5606120  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 5846712 - 5846672
Alignment:
Q  411 accatggtaggaaattggaatcaagaatcctctaattcaac 451  Q
    ||||| |||||| |||||||||||||| |||||||||||||    
T  5846712 accattgtaggagattggaatcaagaaacctctaattcaac 5846672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 5884782 - 5884742
Alignment:
Q  411 accatggtaggaaattggaatcaagaatcctctaattcaac 451  Q
    ||||| |||||| |||||||||||||| |||||||||||||    
T  5884782 accattgtaggagattggaatcaagaaacctctaattcaac 5884742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 23268616 - 23268731
Alignment:
Q  10 gcagagaaggaaggaaaacaatgtaagaaatgtaattgatctcattgttgtttaattactcttgagtgacaaaaacggaacaaatggtttgttttataaa 109  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||| ||| ||| || ||| |||||||||||||||||| || |    
T  23268616 gcagaaaaggaaggaaaacaatgaaagtaatgtaattgatctcattgttgattaa-tactc-tgaatgaaaacaacagaacaaatggtttgttttgtaca 23268713  T
Q  110 gtttcagaaacatgcata 127  Q
    |||||||||| |||||||    
T  23268714 gtttcagaaatatgcata 23268731  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 23268838 - 23268919
Alignment:
Q  230 atgatgcattaaagttgtccactttccatattaagc-tta--gtctttttgggccttccattgtggctgagaaaaatgttac 308  Q
    |||||||||||||||||||||||||||||||||| | |||   |||||||||| | |||||||||| |||||||||||||||    
T  23268838 atgatgcattaaagttgtccactttccatattaaacattattatctttttgggtcgtccattgtggatgagaaaaatgttac 23268919  T

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