View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_6 (Length: 494)
Name: NF5246_low_6
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 36165968 - 36166441
Alignment:
| Q |
19 |
tcatccaccgctaacaccgcatcctcttagccaacactttcacaattagtttatacaagcaccccaaaagtgaaattagactataatcttttaacttatc |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |||||||||||| |
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| T |
36165968 |
tcattcaccgctaacaccgcatcctcttagccaacactttcacaattagtttatacaagcaccccaaaagcgaaattagacgatttttttttaacttatc |
36166067 |
T |
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| Q |
119 |
aatttttggaatcaaagccacaaagtatgacaagaagctcttgggcaaaacttcattcccatggaattggtcgaacatcaatctaatattccctttcaaa |
218 |
Q |
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| T |
36166068 |
aatttttggaatcaaagccacaaagtatgacaacaagcttttgggcaaaacttcattcccatggaattggttgaacatcaatctaatattctctttcaaa |
36166167 |
T |
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| Q |
219 |
aggtacaagaaagccttgatgaaagcaaaattgagaccatcgggtcccatacttttattaccctcaattttcaaaacgactgcttctatttccaaaagtg |
318 |
Q |
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| T |
36166168 |
aggtacaagaaagccttgatgaaagcaaaattgagaccatcgggtcccatac-tttattaccctcaattttcaaaacgactgcttctatttccaaaagtg |
36166266 |
T |
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| Q |
319 |
aaaaaggcgccaccaacaaagcatttccctcctcctaaagccttgcaaggtttaccccatccaactttggccgatcccaagtagatgagacatggctcct |
418 |
Q |
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||||||| ||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36166267 |
aaaaaggtgccaccaacaaagtatttcccacctcctcaagccttgcaaagtttaccccatccaactttggtcgatcccaagtagatgagacatggctcct |
36166366 |
T |
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| Q |
419 |
aaagtaattcaccaccgtctccctcacttctaatgttttttgaatccaaacctcatccaccttaattgcctttatt |
494 |
Q |
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| T |
36166367 |
aaaataattcaccaccg-ccccctcacctctaatgttttttgaatccaaacctcatccaccttaattgcctttatt |
36166441 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 2439746 - 2439775
Alignment:
| Q |
122 |
ttttggaatcaaagccacaaagtatgacaa |
151 |
Q |
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| T |
2439746 |
ttttggaatcaaagccacaaagtatgacaa |
2439775 |
T |
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