View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5246_low_7 (Length: 476)
Name: NF5246_low_7
Description: NF5246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5246_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 37673727 - 37673458
Alignment:
| Q |
18 |
gtaaatgaatgtgataaataaattttaactcataataattgtaagtttgcaaagattgagaagttttggtaataatattgtctgttctagtggataaaca |
117 |
Q |
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| T |
37673727 |
gtaaatgaatgtgataaatacattttaactcataataattgtaagtttgcaaagattgagaagttttggtaataatcttgtctgttctagtggataaaca |
37673628 |
T |
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| Q |
118 |
tatgagaagagaaagaagcaaatgaataaggtaaacaaacatcatggactggtctgtcactcttgtgttactgatgacaatattgggatattaatatata |
217 |
Q |
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| T |
37673627 |
tatgagaagagaaagaagcaaatgaataaggta----aacatgatggactggtctgtcactattttg----tgatgacaatattgggatattaatatata |
37673536 |
T |
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| Q |
218 |
gtgctcgtgttggtgcttcaaagcatgcgaatgctttcatcacacatgacttgatgcttccctaagcaggaacccaca |
295 |
Q |
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| T |
37673535 |
gtgctcgtgttggtgcttcaaagcatgcgaatgctttcatcacacatgacttgatgcttccctaagcaggaacccaca |
37673458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 323 - 467
Target Start/End: Complemental strand, 37673429 - 37673285
Alignment:
| Q |
323 |
tatattgtcccttgttgttgtgatacaagacaactagctaacaaataccatcaaagtaggcaaatgctataaaagcctaataggactctattggcctcca |
422 |
Q |
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| T |
37673429 |
tatattgtcccttgttgttgtgatacaagacaactagctaacaaataccatcaaagtaggcaaatgctataaaagcctaataggactctattggcctcca |
37673330 |
T |
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| Q |
423 |
aatgttcagttgcaagcattccctcatacagtgctcaagtataat |
467 |
Q |
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| T |
37673329 |
aatgttcagttgcaagcattccctcatacagtgctcaattataat |
37673285 |
T |
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