View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_high_1 (Length: 765)

Name: NF5247_high_1
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_high_1
NF5247_high_1
[»] chr1 (3 HSPs)
chr1 (33-418)||(7431051-7431436)
chr1 (33-239)||(14605830-14606036)
chr1 (321-418)||(14605745-14605842)
[»] chr4 (4 HSPs)
chr4 (607-749)||(31662490-31662632)
chr4 (415-558)||(10799540-10799683)
chr4 (316-382)||(5595633-5595699)
chr4 (316-382)||(5601826-5601892)
[»] chr2 (2 HSPs)
chr2 (607-749)||(31330366-31330508)
chr2 (607-749)||(31337087-31337229)
[»] scaffold0029 (1 HSPs)
scaffold0029 (415-558)||(57389-57532)
[»] chr8 (2 HSPs)
chr8 (415-558)||(28955447-28955590)
chr8 (321-382)||(28959670-28959731)
[»] chr5 (3 HSPs)
chr5 (316-382)||(5021042-5021108)
chr5 (316-382)||(34630293-34630359)
chr5 (316-382)||(22122620-22122686)
[»] chr7 (2 HSPs)
chr7 (680-745)||(34455146-34455211)
chr7 (113-235)||(26340341-26340464)
[»] scaffold0038 (1 HSPs)
scaffold0038 (560-593)||(47439-47472)
[»] chr6 (1 HSPs)
chr6 (560-593)||(28247277-28247310)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 33 - 418
Target Start/End: Original strand, 7431051 - 7431436
Alignment:
Q  33 attgcagcagtatatgtagtttctctacctaaagagtgtactgatgtagaaaacaaattaattccatgtaatcagaattctctgccaacaatgctaatta 132  Q
    ||||||| || ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7431051 attgcaggagcatatgtagtttctctgcctaaatagtgtactgatgcagaaaacaaattaattccatgtaatcagaattctctgccagctatgctaatta 7431150  T
Q  133 attatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgcttttacaacaaaatcagaccacatattctca 232  Q
    ||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  7431151 attctatacagttagcctataaaaacaaattaatgcagtcaaaaattgcagcctacgtaatcagaatgcttttacaacaaaatcagaccccatattctca 7431250  T
Q  233 ttacaagtaatagaaaacaaggtggcctaaacattcatgtagcagtttaatcaggtaaccaaggtggccttaacaaagtgatcaaatattctcattacaa 332  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  7431251 ttacaagtaacagaaaacaaggtggcctaaacattcatgtagcagtttaatcaggtaaccaaggtggccttaataaagtgaccaaatattctcattacaa 7431350  T
Q  333 ggaacagagtaatcataacgctcttttactcttgcaaatttgctctttgaatgctcaatgaatattcattgcagaatgctctttga 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7431351 ggaacagagtaatcataatgctcttttactcttgcaaatttgctctttgaatgctctatgaatattcattgcagaatgctctttga 7431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 14606036 - 14605830
Alignment:
Q  33 attgcagcagtatatgtagtttctctacctaaagagtgtactgatgtagaaaacaaattaattccatgtaatcagaattctctgccaacaatgctaatta 132  Q
    ||||||| || ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14606036 attgcaggagcatatgtagtttctctgcccaaagagtgtactgatgcagaaaacaaattaattccatgtaatcagaattctctgccaactatgctaatta 14605937  T
Q  133 attatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgcttttacaacaaaatcagaccacatattctca 232  Q
    ||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  14605936 attctatacaattagcctataaaaacaaattaatgcagtcaaagattgcagcctacataatcggaatgcttttacaacaaaatcagaccacatgttctca 14605837  T
Q  233 ttacaag 239  Q
    |||||||    
T  14605836 ttacaag 14605830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 14605842 - 14605745
Alignment:
Q  321 ttctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttgaatgctcaatgaatattcattgcagaatgctctttga 418  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  14605842 ttctcattacaagcaacagagtaatcataatgctcttttactcttgcaaatttgatctttgaatgctctatgaatattcattgcagaatgctctttga 14605745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 607 - 749
Target Start/End: Original strand, 31662490 - 31662632
Alignment:
Q  607 gcttatgtgttttgcttgagttatggaagaattagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 706  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662490 gcttatgtgttttgcttgagttatggaagaagtagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 31662589  T
Q  707 tggtttgaaggagttagagctaagatggtgatcatgtagagag 749  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31662590 tggtttgaaggagttagagctaagatggtgatcatgtagagag 31662632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 415 - 558
Target Start/End: Original strand, 10799540 - 10799683
Alignment:
Q  415 ttgactgatctcagtgaatggatttaacacatgggagggcagtgaactaaaagcacttgggagtaagtgctccatgaaaacataattatcatgacttttc 514  Q
    |||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10799540 ttgacttatctcagttagtggatttaacacatgggagggcagtgaactaaacgcacttgggagtaagtgctccatgaaaacatgattatcatgacttttc 10799639  T
Q  515 attccaattactcttccagttttaacatcagcacacctgcccaa 558  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  10799640 attccaattacccttccagttttaacatcggcacacctgcccaa 10799683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 5595633 - 5595699
Alignment:
Q  316 aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga 382  Q
    ||||||||||||||||||||||| |||||||| || ||||||| | | |||||||||||||||||||    
T  5595633 aaatattctcattacaaggaacatagtaatcagaatgctctttcattattgcaaatttgctctttga 5595699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 5601826 - 5601892
Alignment:
Q  316 aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga 382  Q
    ||||||||||||||||||||||| |||||||| || ||||||| | | |||||||||||||||||||    
T  5601826 aaatattctcattacaaggaacatagtaatcagaatgctctttcattattgcaaatttgctctttga 5601892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 607 - 749
Target Start/End: Original strand, 31330366 - 31330508
Alignment:
Q  607 gcttatgtgttttgcttgagttatggaagaattagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 706  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330366 gcttatgtgttttgcttgagttatggaagaagtagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 31330465  T
Q  707 tggtttgaaggagttagagctaagatggtgatcatgtagagag 749  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  31330466 tggtttgaagaagttagagctaagatggtgatcatgtaaagag 31330508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 607 - 749
Target Start/End: Original strand, 31337087 - 31337229
Alignment:
Q  607 gcttatgtgttttgcttgagttatggaagaattagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 706  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337087 gcttatgtgttttgcttgagttatggaagaagtagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 31337186  T
Q  707 tggtttgaaggagttagagctaagatggtgatcatgtagagag 749  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  31337187 tggtttgaagaagttagagctaagatggtgatcatgtaaagag 31337229  T

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Target: scaffold0029 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 415 - 558
Target Start/End: Original strand, 57389 - 57532
Alignment:
Q  415 ttgactgatctcagtgaatggatttaacacatgggagggcagtgaactaaaagcacttgggagtaagtgctccatgaaaacataattatcatgacttttc 514  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  57389 ttgactaatctcagtgagtggatttaacacatgggagggcagtgaactaaacgcacttgggagtaagtgctccatgaaaacatgattatcatgacttttc 57488  T
Q  515 attccaattactcttccagttttaacatcagcacacctgcccaa 558  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  57489 attccaattacccttccagttttaacatcggcacacctgcccaa 57532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 415 - 558
Target Start/End: Complemental strand, 28955590 - 28955447
Alignment:
Q  415 ttgactgatctcagtgaatggatttaacacatgggagggcagtgaactaaaagcacttgggagtaagtgctccatgaaaacataattatcatgacttttc 514  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28955590 ttgactgatctcagtaagtggatttaacacatgggagggtagtgaactaaacgcacttggtagtaagtgctccatgaaaacatgattatcatgacttttc 28955491  T
Q  515 attccaattactcttccagttttaacatcagcacacctgcccaa 558  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  28955490 attccaattacccttccagttttaacatcggcacacctgcccaa 28955447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 28959731 - 28959670
Alignment:
Q  321 ttctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga 382  Q
    ||||||||||||||||||||||||||| || ||||||| | | |||||||||||||||||||    
T  28959731 ttctcattacaaggaacagagtaatcagaatgctctttcattattgcaaatttgctctttga 28959670  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 5021042 - 5021108
Alignment:
Q  316 aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga 382  Q
    |||||||||||||||||||||||||||||||| || ||||||| | | |||||||||||||||||||    
T  5021042 aaatattctcattacaaggaacagagtaatcagaatgctctttcattattgcaaatttgctctttga 5021108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 34630359 - 34630293
Alignment:
Q  316 aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga 382  Q
    |||||||||||||| ||||||||||||||||| || ||||||| | | |||||||||||||||||||    
T  34630359 aaatattctcattataaggaacagagtaatcaaaatgctctttcattattgcaaatttgctctttga 34630293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 22122620 - 22122686
Alignment:
Q  316 aaatattctcattacaaggaacagagtaatcataacgctcttttactcttgcaaatttgctctttga 382  Q
    |||||||||||||||||||||||||||||| | || ||||||| | | ||||||||||| |||||||    
T  22122620 aaatattctcattacaaggaacagagtaattagaatgctctttcattattgcaaatttgttctttga 22122686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 680 - 745
Target Start/End: Original strand, 34455146 - 34455211
Alignment:
Q  680 aagaagttcattcaagtgatcctagcatggtttgaaggagttagagctaagatggtgatcatgtag 745  Q
    ||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||    
T  34455146 aagaaattcattcaagtgattctagcatgggttgaagaagttagagctaagatggtaatcatgtag 34455211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 26340464 - 26340341
Alignment:
Q  113 tctgccaacaatgctaattaattatatacaattaacctataaaaacaaattaatgcagtcaaacattgcagcctacgtaatcggaatgctttta-caaca 211  Q
    ||||||| | ||||||||||||| |||||||||| ||||| |||||||||||||| ||||||| |||  |||||| ||||||  |||||| | | || ||    
T  26340464 tctgccagctatgctaattaattctatacaattagcctattaaaacaaattaatgtagtcaaagattttagcctatgtaatcacaatgctctaatcatca 26340365  T
Q  212 aaatcagaccacatattctcatta 235  Q
    |||| |||||| ||| ||||||||    
T  26340364 aaataagaccaaatactctcatta 26340341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 593
Target Start/End: Complemental strand, 47472 - 47439
Alignment:
Q  560 atagaattatacttgtcatttctatagttagccc 593  Q
    ||||||||||||||||||||||||| ||||||||    
T  47472 atagaattatacttgtcatttctatggttagccc 47439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 593
Target Start/End: Complemental strand, 28247310 - 28247277
Alignment:
Q  560 atagaattatacttgtcatttctatagttagccc 593  Q
    ||||||||||||||||||||||||| ||||||||    
T  28247310 atagaattatacttgtcatttctatggttagccc 28247277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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