View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_high_14 (Length: 304)

Name: NF5247_high_14
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_high_14
NF5247_high_14
[»] chr8 (10 HSPs)
chr8 (123-294)||(25642182-25642354)
chr8 (132-294)||(25691052-25691214)
chr8 (123-294)||(25636944-25637136)
chr8 (132-183)||(25691337-25691388)
chr8 (24-68)||(25642083-25642127)
chr8 (251-294)||(25382087-25382130)
chr8 (24-68)||(25636523-25636567)
chr8 (147-183)||(25382005-25382041)
chr8 (24-66)||(25381499-25381541)
chr8 (192-235)||(25691666-25691709)
[»] scaffold0070 (1 HSPs)
scaffold0070 (27-66)||(39797-39836)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 123 - 294
Target Start/End: Original strand, 25642182 - 25642354
Alignment:
Q  123 aattggtggaagtagttgtaaaaatagttaa-tattatctcacttcttctctgaactttattcctttttaataaacaaaaatgcaggaattcaatctaat 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25642182 aattggtggaagtagttgtaaaaatagttaaatattatctcacttcttctctgaactttattcgtttttaataaacaaaaatgcaggaattcaatctaat 25642281  T
Q  222 ctgaacagaagtaaggctaaattcctgcactagaaattggggtaggtatgtgtagaatttacttgtctctgtg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25642282 ctgaacagaagtaaggctaaattcctgcactagaaattggggtaggtatgtgtagaatttacttgtctctgtg 25642354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 25691052 - 25691214
Alignment:
Q  132 aagtagttgtaaaaatagttaatattatctcacttcttctctgaactttattcctttttaataaacaaaaatgcaggaattcaatctaatctgaacagaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25691052 aagtagttgtaaaaatagttaatattatctcacttcttctctgaactttattcctttttaataaataaaaatgcaggaattcaatctaatctgaacagaa 25691151  T
Q  232 gtaaggctaaattcctgcactagaaattggggtaggtatgtgtagaatttacttgtctctgtg 294  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25691152 gtaatgctaaattcctgcactagaaattggggtaggtatgtgtagaatttacttgtctctgtg 25691214  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 123 - 294
Target Start/End: Original strand, 25636944 - 25637136
Alignment:
Q  123 aattggtggaagtagttgtaaaaatagttaatattatctcacttcttctctgaactttattccttttta----------ataaacaaaaatgcaggaatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||          ||||| |||||||||||||||    
T  25636944 aattggtggaagtagttgtaaaaatagttaatattatctcacttcttctctgaactttattactttttaataagaaactataaataaaaatgcaggaatt 25637043  T
Q  213 caatctaatctgaacagaagtaa-----------ggctaaattcctgcactagaaattggggtaggtatgtgtagaatttacttgtctctgtg 294  Q
    ||||| |||||||||||||||||            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  25637044 caatcaaatctgaacagaagtaattgactaagcgtgctaaattcctgcactagaaattggggcaggtatgtgtagaatttacttgtctatgtg 25637136  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 25691337 - 25691388
Alignment:
Q  132 aagtagttgtaaaaatagttaatattatctcacttcttctctgaactttatt 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25691337 aagtagttgtaaaaatagttaatattatctcacttcttctctgaactttatt 25691388  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 25642083 - 25642127
Alignment:
Q  24 gtttatactttataaacaatttttattcactaaaaactagttata 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25642083 gtttatactttataaacaatttttattcactaaaaactagttata 25642127  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 25382087 - 25382130
Alignment:
Q  251 ctagaaattggggtaggtatgtgtagaatttacttgtctctgtg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25382087 ctagaaattggggtaggtatgtgtagaatttacttgtctctgtg 25382130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 25636523 - 25636567
Alignment:
Q  24 gtttatactttataaacaatttttattcactaaaaactagttata 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  25636523 gtttatactttataaacaatttttattcactaaaaattagttata 25636567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 25382005 - 25382041
Alignment:
Q  147 tagttaatattatctcacttcttctctgaactttatt 183  Q
    |||||||||||||||||||||||||||||||||||||    
T  25382005 tagttaatattatctcacttcttctctgaactttatt 25382041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 25381499 - 25381541
Alignment:
Q  24 gtttatactttataaacaatttttattcactaaaaactagtta 66  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  25381499 gtttatacttcataaacaatttttattctctaaaaactagtta 25381541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 25691666 - 25691709
Alignment:
Q  192 ataaacaaaaatgcaggaattcaatctaatctgaacagaagtaa 235  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||    
T  25691666 ataaataaaaatgcagggattccatctaatctgaacagaagtaa 25691709  T

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Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 39836 - 39797
Alignment:
Q  27 tatactttataaacaatttttattcactaaaaactagtta 66  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39836 tatactttataaacaatttttattcactaaaaactagtta 39797  T

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