View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_high_22 (Length: 250)

Name: NF5247_high_22
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_high_22
NF5247_high_22
[»] chr5 (1 HSPs)
chr5 (48-107)||(38475928-38475987)
[»] chr2 (2 HSPs)
chr2 (36-107)||(30866256-30866328)
chr2 (198-245)||(33304712-33304759)
[»] chr6 (2 HSPs)
chr6 (200-243)||(23281302-23281345)
chr6 (198-243)||(25160765-25160810)
[»] chr3 (1 HSPs)
chr3 (55-107)||(32797809-32797861)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 38475987 - 38475928
Alignment:
Q  48 tgttctgaaattgttaaataatcaactcattatcaaccattttgaacacatctctctcaa 107  Q
    |||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  38475987 tgttatgaaatcgttgaataatcaactcattatcaacctttttgaacacatctctctcaa 38475928  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 30866256 - 30866328
Alignment:
Q  36 tacgagcttttttgttctgaaattg-ttaaataatcaactcattatcaaccattttgaacacatctctctcaa 107  Q
    |||||| ||| |||||||||||||  || ||||||||| |||||||||||  |||||||||||||||||||||    
T  30866256 tacgaggtttcttgttctgaaatttattgaataatcaattcattatcaacttttttgaacacatctctctcaa 30866328  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 33304759 - 33304712
Alignment:
Q  198 tatatccttccttcatcgataagctcatcacatatactgatgcagact 245  Q
    ||||||||||||  || |||||||||||||| ||||||||||||||||    
T  33304759 tatatccttcctcaattgataagctcatcacctatactgatgcagact 33304712  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 23281302 - 23281345
Alignment:
Q  200 tatccttccttcatcgataagctcatcacatatactgatgcaga 243  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  23281302 tatccttccttcattgataagctcatcacttatactgatgcaga 23281345  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 25160810 - 25160765
Alignment:
Q  198 tatatccttccttcatcgataagctcatcacatatactgatgcaga 243  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||    
T  25160810 tatatccttcctccatttataagctcatcacatatactgatgcaga 25160765  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 32797809 - 32797861
Alignment:
Q  55 aaattgttaaataatcaactcattatcaaccattttgaacacatctctctcaa 107  Q
    |||||||||||||||||| |||||||||||  | | |||||||||||||||||    
T  32797809 aaattgttaaataatcaattcattatcaactttgtcgaacacatctctctcaa 32797861  T

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