View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_high_26 (Length: 240)
Name: NF5247_high_26
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4169553 - 4169331
Alignment:
| Q |
18 |
acatgttcctagaaaaaattatgcaaactactgctactat--cattgtggctacatagcaaattaagaaaaaattataccaccattatttcatgtgattt |
115 |
Q |
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| T |
4169553 |
acatgttcctacaaaaaattatgcaaactactgctactatatcattggggctgcatagcaaaataagaaaaaattataccaccattatttcatgtgatat |
4169454 |
T |
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| Q |
116 |
gaagagttgaaactatcatagtatcccaaacgatttcactgggtttacaccatctctattgcaagtattacaccttttccaatccaatttctgcacgtta |
215 |
Q |
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| T |
4169453 |
gaagagttgaaactatcatggtatcccaaacgatttcactgggtttacaccatctctattgcaagtattacaccttttccaatccaattcctgcacgtta |
4169354 |
T |
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| Q |
216 |
ccaccatattaaagtaagtatcg |
238 |
Q |
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|||||||||||||||| |||||| |
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| T |
4169353 |
ccaccatattaaagtaggtatcg |
4169331 |
T |
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