View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_high_28 (Length: 239)
Name: NF5247_high_28
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_high_28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 43258041 - 43257819
Alignment:
| Q |
17 |
agtatcaacatgagcagtagttcctgtattggtttcttcttcggctgttgtaacattcatcgatccttccaaattcatttcaacatcattatcttctcca |
116 |
Q |
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| T |
43258041 |
agtatcaacatgagcagtagttcctgtattggtttcttcttcggctgttgtaacattcatcgatccttccaaattcatttcaacatcattatcttctcca |
43257942 |
T |
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| Q |
117 |
tacgcgacttcataaatactgatctttttaagccaatttactattgtaaaagttgacaagttttcttcaccaccgtcaggcggaacaccattttcatcat |
216 |
Q |
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| T |
43257941 |
tacgtgacttcataaatactgatctttttaagccaatttactattgtaaaagttgacaagttttcttcaccaccgtcaggcggaacaccattttcatcat |
43257842 |
T |
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| Q |
217 |
gaaagctttggacctcatctatt |
239 |
Q |
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| T |
43257841 |
gaaagctttggacctcatctatt |
43257819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 43255986 - 43255780
Alignment:
| Q |
23 |
aacatgagcagtagttcctgtattggtttcttcttcggctgttgtaacattcatcgatccttccaaattcatttcaacatcattatcttctccatacgcg |
122 |
Q |
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||||| || |||| |||||| ||| ||||||| ||| |||||| | ||||||| || | ||||||||||| ||||| ||||||||||||||||| ||| |
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| T |
43255986 |
aacattagtagtacttcctgcattaatttcttcatcgactgttgcagaattcatcaattcatccaaattcatatcaacttcattatcttctccatatgcg |
43255887 |
T |
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| Q |
123 |
acttcataaatactgatctttttaagccaatttactattgtaaaagttgacaagttttcttcaccaccgtcaggcggaacaccattttcatcatgaaagc |
222 |
Q |
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| T |
43255886 |
acttcataaatattgatctttttaagccaatttactttgctaaaagttgaaaagttttcttctgtaacgtcaggcggaacaccattttcatcacgaaagc |
43255787 |
T |
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| Q |
223 |
tttggac |
229 |
Q |
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| T |
43255786 |
tttggac |
43255780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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