View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_high_32 (Length: 211)
Name: NF5247_high_32
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 32248952 - 32248772
Alignment:
| Q |
16 |
cataaattttgtttgttgattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248952 |
cataaattttgtttgttgattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattag |
32248853 |
T |
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| Q |
116 |
aagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactactataatttgcaacaaactaacaaatttat |
197 |
Q |
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| T |
32248852 |
aagaaaaacttgatatcttaatcctaatta-attaacacccaaaattcactactataatttgcaacaaactaacaaatttat |
32248772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 32236620 - 32236534
Alignment:
| Q |
111 |
attagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactactataatttgcaacaaactaacaaatttat |
197 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32236620 |
attagaagaaaaacttgatatcataatcctaattagattaacacccaaaattcactactataatttgcaacaaactaacaaatttat |
32236534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 32255209 - 32255040
Alignment:
| Q |
16 |
cataaattttgtttgttgattctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattag |
115 |
Q |
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||||||||||| || |||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| || |
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| T |
32255209 |
cataaattttgcttattgattct-----aagtctattgcattcctc--ctccatgggaatcatgttcaactttgcaaatattagagtgcatggacatcag |
32255117 |
T |
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| Q |
116 |
aagaaaaacttgatatcctaatcctaattagattaacaccccaaattcacta-ctataatttgcaacaaactaacaaatttat |
197 |
Q |
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|||||||| |||| |||||||||| || |||||| |||||||||| |||| |||||||||| ||||||||||||| |
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| T |
32255116 |
aagaaaaagttga------catcctaattaagttgacacccaaaattcactacctatcatttgcaacaccctaacaaatttat |
32255040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 23203128 - 23203048
Alignment:
| Q |
34 |
attctatgacaagtctattgcattcctcctctcgatggaaatcatgttcaactttgcaaaatttagagtgcatggacattaga |
116 |
Q |
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||||||||| |||| |||||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
23203128 |
attctatgataagtatattgcattcatcctcc--atggaagtcatgttcaactttgcaaaaattagagtgcatgggcattaga |
23203048 |
T |
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