View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_high_8 (Length: 440)
Name: NF5247_high_8
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 41760125 - 41759721
Alignment:
| Q |
11 |
cacagatagtgaaatgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacac |
110 |
Q |
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| T |
41760125 |
cacagatagtgaaatgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacac |
41760026 |
T |
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| Q |
111 |
atattgtccatagtgttcactctgtaaagaaagagaatgaaatgaggtttggtagattgtaagtagtgagatatgatggtttggtgaattaaagccagga |
210 |
Q |
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| T |
41760025 |
atattgtccatagtgttcactct--aaagaaagagaatgaaatgaggtttggtagattgtaagtagtgagatatgatggtttggtgaattaaagccagga |
41759928 |
T |
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| Q |
211 |
aggcctcattatatatagtggtgactggtgtggtgtgtactggagagggtgattctattattatttttgttggtttctgaaaataatttaaagacttttc |
310 |
Q |
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| T |
41759927 |
aggcctcattatatatagtggtgactggtgtg-----tactggagagggtgattctattattatttttgttggtttctgaaaataatttaaagacatttc |
41759833 |
T |
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| Q |
311 |
aattgataatactatgtgcttattgtgttcagtggaaaaggttagacttcaccatgtgatgaatatggttcgaatcaagaagagaaaagaaaattatgtt |
410 |
Q |
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| T |
41759832 |
aattgataatactatgtgcttattgtgttcagtggaaaaggttagacttcaccatgtgatgaatatggttcgaatcaagaagagaaaagaaaattatgtt |
41759733 |
T |
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| Q |
411 |
ttccattattag |
422 |
Q |
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| T |
41759732 |
ttccattattag |
41759721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 41794977 - 41794854
Alignment:
| Q |
11 |
cacagatagtgaaatgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
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| T |
41794977 |
cacagatagtgaaatgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgagtcagtgttgatatattttggaattttaatcgacac |
41794878 |
T |
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| Q |
111 |
atattgtccatagtgttcactctg |
134 |
Q |
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| T |
41794877 |
atattgtccatagtgtttactctg |
41794854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 41794831 - 41794762
Alignment:
| Q |
173 |
gtagtgagatatgatggtttggtgaattaaagccaggaaggcctcattatatatagtggtgactggtgtg |
242 |
Q |
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| T |
41794831 |
gtagtgagataggatggtttggtgaattaagggcatgaatgactcattatatatagtgctgattggtgtg |
41794762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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